SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene165125

Length: 233 nt

UniGene Fasta

>sp_v3.0_unigene165125
CCATAGCAGACAACGGTGATGTTTATACATGGGGACTAGGACACATGGGCCAGCTAGGTCATCGCTCTCTTCAATATGACAACAAAGAATTGTTGCCTCGGCGAGTTGTAGGTCTGGAGGGTATAAAAGTCAAGGATATTGCTTGTGGTGGTATTCATACATGTGCTGTCACTATGCAAGGATCATTGTATGCATGGGGTGTGGCCAGGCAGGTCAACTGGGTCTGGGTCCTC

Ace file of the UniGene sp_v3.0_unigene165125

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[DZ] COG5184 Alpha-tubulin suppressor and related RCC1 domain-containing proteins	-	-	4.0e-05	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%

Source	Gene names
Sma3	F14P3.5; GSVIVT00038080001; LOC_Os03g40260; OJ1523_A02.10; Os03g0599600; OsI_12508; OsI_12517; OsJ_11655; POPTRDRAFT_584616; POPTRDRAFT_595922; POPTRDRAFT_785805; RCOM_0790230; VITISV_032298;

Source	InterPros	Term	Type	Identity
Sma3	Ribosome-binding factor A	IPR000238	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II	IPR009091	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G02300.1	Regulator of chromosome condensation (RCC1) family protein chr3:461551-463929 FORWARD LENGTH=471	2.0e-29	66%
RefSeq	Arabidopsis thaliana	NP_186879.2	regulator of chromosome condensation domain-containing protein [Arabidopsis thaliana]	3.0e-29	66%
RefSeq	Populus trichocarpa	XP_002330952.1	predicted protein [Populus trichocarpa]	6.0e-30	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNM4

Fln msg: Distance to subject end: 131 aas, your sequence is shorter than subject: 77 - 286

Fln protein: IADNGDVYTWGLGHMGQLGHRSLQYDNKELLPRRVVGLEGIKVKDIACGGIHTCAVTMQGSLYAWGVARQVNWVWVL

Protein Length: 78

Fln nts: CCATAGCAGACAACGGTGATGTTTATACATGGGGACTAGGACACATGGGCCAGCTAGGTCATCGCTCTCTTCAATATGACAACAAAGAATTGTTGCCTCGGCGAGTTGTAGGTCTGGAGGGTATAAAAGTCAAGGATATTGCTTGTGGTGGTATTCATACATGTGCTGTCACTATGCAAGGATCATTGTATGCATGGGGTGTGGCCAGGCAGGTCAACTGGGTCTGGGTCCTC

Fln Alignment:

HA8LWWM01AKFTN___VYTWGLGHMGQLGHRSLQYDNKELLPRRVVGLEGIKVKDIACGGIHTCAVTMQGSLYAWG
B8LNM4________________VYSWGWGDFGRLGHGN---SSDLFIPHAIKTLQGLQIKQIACGDSHCLAVTINGEVQSWG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain