SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene165094

Length: 186 nt

UniGene Fasta

>sp_v3.0_unigene165094
ACCAGACGAATCATCCTTCATTGGGTACATCACTGATACTAGACCATGTCTATATACGTTCTGCCACAAGAGATTATATGGAGGAGGTCAACTTAGTATCTGGCTACACTGGCAAGCCAATCAAAATTCAGTGCGGCAGAGTTTACCATGCAATAATAATGACAGATGATGGCCGTGCATGGACAT

Ace file of the UniGene sp_v3.0_unigene165094

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	82%

Source	Gene names
Sma3	PHYPADRAFT_164083;

Source	InterPros	Term	Type	e value	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	0.0	-
Sma3	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II	IPR009091	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9SC81

Fln msg: Distance to subject end: 177 aas, your sequence is shorter than subject: 61 - 487

Fln protein: QTNHPSLGTSLILDHVYIRSATRDYMEEVNLVSGYTGKPIKIQCGRVYHAIIMTDDGRAWT

Protein Length: 62

Fln nts: ACCAGACGAATCATCCTTCATTGGGTACATCACTGATACTAGACCATGTCTATATACGTTCTGCCACAAGAGATTATATGGAGGAGGTCAACTTAGTATCTGGCTACACTGGCAAGCCAATCAAAATTCAGTGCGGCAGAGTTTACCATGCAATAATAATGACAGATGATGGCCGTGCATGGACAT

Fln Alignment:

HA8LWWM01ENLGT___VYIRSATRDYMEEVNLVSGYTGKPIKIQCGRVYHAIIMTDDGRAWT
A9SC81________________VYIRAATKDYMDEVNLVSGYTGKPFKIQCGGIYHAILLTDDGRAWT

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain