SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene164972

Length: 213 nt

UniGene Fasta

>sp_v3.0_unigene164972
ATTGGGGCTATGGCCGAGTTTACACAGTCGTGGTTGTCAATTGCACATTTTCTCAGAGCGTGGGCACCGATGACAATGGTGGAGAGCTCATTCTTCACGCAATCCATGGCGACGAGTTTGGAAAACCAGAGAGGATCGTTGCTCTCGAGGAAGAAAAAGGTAGCTACAATGGCTCTGTTTATAGCCAGGCTCCTCCCTATGATTATCTCTACT

Ace file of the UniGene sp_v3.0_unigene164972

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	54%
Sma3	Os02g0712500 protein	-	-	9.26e-06	-

Source	Gene names
Sma3	OJ1038_A06.31; Os02g0712500; OsI_08667; OsJ_08123; PHYPADRAFT_120256; PHYPADRAFT_13891; PHYPADRAFT_222159; RCOM_1602470;

Source	InterPros	Term	Type	e value	Identity
Sma3	Domain of unknown function DUF23	IPR008166	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G33570.1	Domain of unknown function (DUF23) chr2:14217361-14219043 FORWARD LENGTH=496	2.0e-18	54%
RefSeq	Arabidopsis thaliana	NP_565768.1	uncharacterized protein [Arabidopsis thaliana]	2.0e-18	54%
RefSeq	Populus trichocarpa	XP_002307008.1	predicted protein [Populus trichocarpa]	2.0e-17	52%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9TGR6

Fln msg: Distance to subject end: 259 aas, your sequence is shorter than subject: 70 - 382

Fln protein: WGYGRVYTVVVVNCTFSQSVGTDDNGGELILHAIHGDEFGKPERIVALEEEKGSYNGSVYSQAPPYDYLY

Protein Length: 71

Fln nts: ATTGGGGCTATGGCCGAGTTTACACAGTCGTGGTTGTCAATTGCACATTTTCTCAGAGCGTGGGCACCGATGACAATGGTGGAGAGCTCATTCTTCACGCAATCCATGGCGACGAGTTTGGAAAACCAGAGAGGATCGTTGCTCTCGAGGAAGAAAAAGGTAGCTACAATGGCTCTGTTTATAGCCAGGCTCCTCCCTATGATTATCTCTACT

Fln Alignment:

HA8LWWM01A78PO___WGYGRVYTVVVVNCTFSQSVGTDDNGGELILHAIHGDEFGKPERIVALEEEKGSYNGSVY-SQAPPYDYLY
A9TGR6________________WDYGKLYTVVVITCVFAEDVGTDGEGGELVLYASYGDRYRQPERVVVLTEVKGEYNSSVFDTKSFPYDYVY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain