SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene164957

Length: 139 nt

UniGene Fasta

>sp_v3.0_unigene164957
AGAAATCAGCAAAAGAGAGCTCCGGAGTAATGTGTTTGAAGTTGGTGGTTATCGATGGTACATCTTAGTATATCCCCAGGGGTGTGATGTCTGTAACCACCTTTCTCTTTTTCTGTGTGTGTCTGACTATGACAAGCTC

Ace file of the UniGene sp_v3.0_unigene164957

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=MATH domain-containing protein At5g43560; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	78%

Source	Gene names
Sma3	AT5G43560; At1g04300; At5g43560; At5g52330; CGL82; CHLREDRAFT_132449; F19P19.26; GSVIVT00020158001; LOC_Os12g40520; MICPUN_69054; OSTLU_4022; Os01g0775300; Os05g0508700; Os12g0597100; OsI_03935; OsI_20565; OsI_38981; OsJ_03647; OsJ_19142; OsJ_36746; P0490

Source	InterPros	Term	Type	e value	Identity
Sma3	MATH	IPR002083	-	0.0	-
Sma3	TRAF-type	IPR013322	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G04300.3	TRAF-like superfamily protein chr1:1148818-1153895 REVERSE LENGTH=1082	3.0e-23	84%
RefSeq	Arabidopsis thaliana	NP_001184907.1	MATH domain-containing protein [Arabidopsis thaliana]	3.0e-23	84%
RefSeq	Populus trichocarpa	XP_002312577.1	predicted protein [Populus trichocarpa]	5.0e-23	82%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8RY18

Fln msg: Distance to subject end: 930 aas, your sequence is shorter than subject: 46 - 1055

Fln protein: EISKRELRSNVFEVGGYRWYILVYPQGCDVCNHLSLFLCVSDYDKL

Protein Length: 47

Fln nts: AGAAATCAGCAAAAGAGAGCTCCGGAGTAATGTGTTTGAAGTTGGTGGTTATCGATGGTACATCTTAGTATATCCCCAGGGGTGTGATGTCTGTAACCACCTTTCTCTTTTTCTGTGTGTGTCTGACTATGACAAGCTC

Fln Alignment:

HA8LWWM01B72W3___EISKRELRSNVFEVGGYRWYILVYPQGCDVCNHLSLFLCVSDYDKL
Q8RY18________________DINKRELRGDVFEVGGYKWYILIYPQGCDVCNHLSLFLCVAHHEKL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain