SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene164934

Length: 323 nt

UniGene Fasta

>sp_v3.0_unigene164934
ACATGTGAAGTAGGAAAGGAGGTGTTTGGTTAAGGAAGCTTCTAATAGATTTGTTCGAGAAGTCTCTAGGTCCTACTATGATTAATTGTGATAATCAAAGTTGTATCAAGATGTTTGGAGATCCCATGTTTCATTCTAGAACAAAGCATATTAACAATAAGTTCCACTCTATTAGGAACTTGGTGCAGGATAGGATCGTGAAGTTGGAGTATGTCTCGATAGATGAACAAGTAGCAGACATACCAAAGGCTCTTCTTAATAAGAGGTTTGAGTATTTGAGAAACCTGCTTGCTTTGGTAGACATTGCTGATTGAATTGATGAT

Ace file of the UniGene sp_v3.0_unigene164934

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	5.0e-18	54%
FL-Next	sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco).	-	-	0.0	34%

Source	Gene names
Sma3	CCHC; VITISV_005279; VITISV_013624; VITISV_037104; VITISV_041860;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	BRCT domain	IPR001357	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: P10978

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 104 - 1328

Fln protein: M*SRKGGVWLRKLLIDLFEKSLGPTMINCDNQSCIKMFGDPMFHSRTKHINNKFHSIRNLVQDRIVKLEYVSIDEQVADIPKALLNKRFEYLRNLLALVDIAD*

Protein Length: 105

Fln nts: ACATGTGAAGTAGGAAAGGAGGTGTTTGGTTAAGGAAGCTTCTAATAGATTTGTTCGAGAAGTCTCTAGGTCCTACTATGATTAATTGTGATAATCAAAGTTGTATCAAGATGTTTGGAGATCCCATGTTTCATTCTAGAACAAAGCATATTAACAATAAGTTCCACTCTATTAGGAACTTGGTGCAGGATAGGATCGTGAAGTTGGAGTATGTCTCGATAGATGAACAAGTAGCAGACATACCAAAGGCTCTTCTTAATAAGAGGTTTGAGTATTTGAGAAACCTGCTTGCTTTGGTAGACATTGCTGATTGA___ATTGATGAT

Fln Alignment:

HA8LWWM01ES5R9___VWLRKLL--IDLFEKSLGPTMINCDNQSCIKMFGDPMFHSRTKHINNKFHSIRNLVQDRIVKLEYVSIDEQVAD-IPKALLNKRFE
P10978________________IWLKRFLQELGLHQKEY---VVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKFE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain