SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene164915

Length: 276 nt

UniGene Fasta

>sp_v3.0_unigene164915
TCGTTTTCAAAGCGAAGAGTCACACAAGTCACAATGTCTTACAAACTCTACACTTATCCCCAAAACCCTCGTGCCTTCAAGATCTTGATCGCCGCCAAGTACGCCGGTCTCGATGTTGAGGTTCCTGCCTTCAACTTCGGTGTTGACAACAAGACCAAGCAATTCTTGGACAAGTTCCCCATGGGTCAAGCCCCCGCCCTTGAGACTCCTGAAGGAGGTGTGTGGGAAAGCAATGCTATCCTCCGCTACATTGCTCGCAAGTCCCCCAAGCTCTAC

Ace file of the UniGene sp_v3.0_unigene164915

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glutathione S-transferase domain-containing protein n=1 Tax=Dictyostelium fasciculatum RepID=F4QCX4_9MYCE	-	-	3.0e-19	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Sma3	AT1G09640 protein	-	-	6.546e-10	-

Source	Gene names
Sma3	AT1G09640; At1g09640; LOC_Os06g37440; OSJNBa0006A22.2; Os06g0571400; OsI_23436; OsJ_21756; P0610D01.10;

Source	GOs	Term	Type	Identity
Sma3	eukaryotic translation elongation factor 1 complex	GO:0005853	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	translation elongation factor activity	GO:0003746	Molecular Function	-
Sma3	translational elongation	GO:0006414	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Translation elongation factor EF1B, gamma chain, conserved	IPR001662	-	-
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3	Glutathione S-transferase, C-terminal-like	IPR010987	-	-
Sma3		IPR012335	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G09640.1	Translation elongation factor EF1B, gamma chain chr1:3120162-3122152 FORWARD LENGTH=414	3.0e-19	53%
RefSeq	Arabidopsis thaliana	NP_001184949.1	elongation factor EF-1 gamma subunit [Arabidopsis thaliana]	1.0e-19	53%
RefSeq	Populus trichocarpa	XP_002328789.1	predicted protein [Populus trichocarpa]	1.0e-17	50%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWP6

Fln msg: Distance to subject end: 342 aas, your sequence is shorter than subject: 81 - 424

Fln protein: MSYKLYTYPQNPRAFKILIAAKYAGLDVEVPAFNFGVDNKTKQFLDKFPMGQAPALETPEGGVWESNAILRYIARKSPKLY

Protein Length: 82

Fln nts: TCGTTTTCAAAGCGAAGAGTCACACAAGTCACA_-_ATGTCTTACAAACTCTACACTTATCCCCAAAACCCTCGTGCCTTCAAGATCTTGATCGCCGCCAAGTACGCCGGTCTCGATGTTGAGGTTCCTGCCTTCAACTTCGGTGTTGACAACAAGACCAAGCAATTCTTGGACAAGTTCCCCATGGGTCAAGCCCCCGCCCTTGAGACTCCTGAAGGAGGTGTGTGGGAAAGCAATGCTATCCTCCGCTACATTGCTCGCAAGTCCCCCAAGCTCTAC

Fln Alignment:

HA8LWWM01CRX5C___MSYKLYTYPQNPRAFKILIAAKYAGLDVEV-PAFNFGVDNKTKQFLDKFPMGQAPALETPEGGVWESNAILRYIAR
A9NWP6________________MALTLHAGHTNKNAFKALIAAEYVGVKINLAPNFEMGVTNKSQKFLSMNPIGKVPVLETPEGAVFESNAIARYVAR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain