SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene164860

Length: 336 nt

UniGene Fasta

>sp_v3.0_unigene164860
CCGAAGGATTGAGTTAAGGAGGATCGATAATGCCTCAACTCGCCGAGTGACTTTCTCCACGCGTCGGAACGGTCTGTTGAAGAAAGCGCATGAGCTGTCTGTGCTTTGCGACGCAGAAGTCGCGGTCATCATCTTCTCAAGCCGTGGAAAACTGTATGAGTTTGGCAGTAAGAGGTGTTCGCAAGAAGAAACAGAAGATAGTTGGAGAAAGGAAGCAGGGTCAACATCGAGCAGACAGTTTACTAAGAGTGTCTGTAGAACTATGGAGAGGTACCAAGAAAAGACGGGTATGAAAGATACGCAATGGAAGCAGTTAACTGAACCAAGCTTAGAGAG

Ace file of the UniGene sp_v3.0_unigene164860

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MADS-box protein CMB1 n=1 Tax=Dianthus caryophyllus RepID=CMB1_DIACA	-	-	8.0e-19	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Sma3	MADS-box protein	-	-	2.335e-21	-

Source	Gene names
Sma3	AG; AG1; AG6; AGL16; AGL28; AGL3; AGL30; AGL31; AGL34; AGL37; AGL39; AGL5; AGL6; AGL6-1; AGL6a; AGL6b; AGL8; AGL9; AOM3; ApMADS3; At2g45650; CAG3; CMADS3; CMB1; CRM1; CUM1; CerMADS2; DEFH72; F17K2.18; FBP28; GBM5; GSVIVT00000012001; GSVIVT00026310001; GSV

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	indeterminate inflorescence morphogenesis	GO:0048283	Biological Process	-
Sma3	ovule development	GO:0048481	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Transcription factor, MADS-box	IPR002100	-	0.0	-
Sma3	Transcription factor, K-box	IPR002487	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G45650.1	AGL6 AGAMOUS-like 6 chr2:18804453-18806291 FORWARD LENGTH=252	2.0e-24	53%
RefSeq	Arabidopsis thaliana	NP_182089.1	agamous-like MADS-box protein AGL6 [Arabidopsis thaliana]	3.0e-24	53%
RefSeq	Populus trichocarpa	XP_002320084.1	predicted protein [Populus trichocarpa]	5.0e-24	61%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NRI7

Fln msg: Distance to subject end: 21 aas, atg_distance in limit (1-15): atg_distance = 4, W2: There is no M at the beginning, your sequence is shorter than subject: 111 - 136

Fln protein: RRIELRRIDNASTRRVTFSTRRNGLLKKAHELSVLCDAEVAVIIFSSRGKLYEFGSKRCSQEETEDSWRKEAGSTSSRQFTKSVCRTMERYQEKTGMKDTQWKQLTEPSLE

Protein Length: 112

Fln nts: CCGAAGGATTGAGTTAAGGAGGATCGATAATGCCTCAACTCGCCGAGTGACTTTCTCCACGCGTCGGAACGGTCTGTTGAAGAAAGCGCATGAGCTGTCTGTGCTTTGCGACGCAGAAGTCGCGGTCATCATCTTCTCAAGCCGTGGAAAACTGTATGAGTTTGGCAGTAAGAGGTGTTCGCAAGAAGAAACAGAAGATAGTTGGAGAAAGGAAGCAGGGTCAACATCGAGCAGACAGTTTACTAAGAGTGTCTGTAGAACTATGGAGAGGTACCAAGAAAAGACGGGTATGAAAGATACGCAATGGAAGCAGTTAACTGAACCAAGCTTAGAGAG

Fln Alignment:

HA8LWWM01EQFMJ___RIELRRIDNASTRRVTFSTRRNGLLKKAHELSVLCDAEVAVIIFSSRGKLYEFGS
A9NRI7________________RVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain