SustainPineDB

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Assembly info
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SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene164853

Length: 179 nt

UniGene Fasta

>sp_v3.0_unigene164853
ATCCTCAAGTGATTCTGATGGAATATGCTACGTTGAGACCATGAACTTAGATTGGGAGACAAATCTAAAACTGAGGAAATGTCTTGATGAAACCAGGAACTTCACCAGCAGTTCCATGTTTCAAGAATTTAATGCTATTGTTGAGTGTGAGCTACCAAATCCCTCTATTTATACTTTTG

Ace file of the UniGene sp_v3.0_unigene164853

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Aminophospholipid ATPase n=1 Tax=Populus trichocarpa RepID=B9GK47_POPTR	-	-	8.0e-14	59%
FL-Next	sp=Phospholipid-transporting ATPase 6; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	59%

Source	ECs	Term	Type	e value	Identity
Sma3	Phospholipid-translocating ATPase.	EC:3.6.3.1	-	7.646e-11	-

Source	Gene names
Sma3	ALA6; ALA7; At1g54280; At3g13900; F20D21.10; MDC16.2; POPTRDRAFT_751108; RCOM_0479420;

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	phospholipid-translocating ATPase activity	GO:0004012	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	GO:0015662	Molecular Function	-
Sma3	ATP biosynthetic process	GO:0006754	Biological Process	-
Sma3	phospholipid transport	GO:0015914	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	ATPase, P-type, phospholipid-translocating, flippase	IPR006539	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	HAD superfamily hydrolase-like, type 3	IPR013200	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G54280.1	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein chr1:20262766-20267293 REVERSE LENGTH=1240	2.0e-18	59%
RefSeq	Arabidopsis thaliana	NP_175830.1	phospholipid-transporting ATPase 6 [Arabidopsis thaliana]	3.0e-18	59%
RefSeq	Populus trichocarpa	XP_002297933.1	aminophospholipid ATPase [Populus trichocarpa]	2.0e-18	59%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SLK6

Fln msg: Distance to subject end: 999 aas, your sequence is shorter than subject: 59 - 1240

Fln protein: SSSDSDGICYVETMNLDWETNLKLRKCLDETRNFTSSSMFQEFNAIVECELPNPSIYTF

Protein Length: 60

Fln nts: ATCCTCAAGTGATTCTGATGGAATATGCTACGTTGAGACCATGAACTTAGATTGGGAGACAAATCTAAAACTGAGGAAATGTCTTGATGAAACCAGGAACTTCACCAGCAGTTCCATGTTTCAAGAATTTAATGCTATTGTTGAGTGTGAGCTACCAAATCCCTCTATTTATACTTTTG

Fln Alignment:

HA8LWWM01ES1XS___SSSDSDGICYVETMNLDWETNLKLRKCLDETRNFTSSSMFQEFNAIVECELPNPSIYTF
Q9SLK6________________SSSYEDGICYVETMNLDGETNLKVKRCLDATLALEKDESFQNFSGTIKCEDPNPNLYTF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain