SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene164800

Length: 300 nt

UniGene Fasta

>sp_v3.0_unigene164800
ACGTCATACCCAATACCCAGGGCACAAGTCCCGTGGCTCTCCAAATATGGCAGTGCAGCAGGAACGGCCGGTTATGGATCGAAAGAGCGGTTATTGCAGAGCCAATGGAATCTATTACAGCAAAAGGGATCCCATCGATCTTCCTCCGACCACTCAACACTTGGACGTCACCACTTATATTTTTTCCCATCATCACCACGATATGCAGCAGATGGCGTTCATCGACGCCTCTAGTGGCATATCGCTCTCTTATGCAGCCCTCCGCCACAATGTGAGAGCCCTCGCTGCCGGACTGGATGG

Ace file of the UniGene sp_v3.0_unigene164800

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	4-coumarate-CoA ligase-like protein [Arabidopsis thaliana]	-	-	3.0e-08	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%

Source	InterPros	Term	Type	e value	Identity
Sma3	AMP-dependent synthetase/ligase	IPR000873	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G20510.1	OPCL1 OPC-8:0 CoA ligase1 chr1:7103645-7105856 REVERSE LENGTH=546	1.0e-11	45%
RefSeq	Arabidopsis thaliana	NP_973872.1	OPC-8:0 CoA ligase1 [Arabidopsis thaliana]	2.0e-11	45%
RefSeq	Populus trichocarpa	XP_002307770.1	acyl:coa ligase [Populus trichocarpa]	5.0e-12	50%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LP93

Fln msg: Distance to subject end: 461 aas, your sequence is shorter than subject: 84 - 548

Fln protein: MAVQQERPVMDRKSGYCRANGIYYSKRDPIDLPPTTQHLDVTTYIFSHHHHDMQQMAFIDASSGISLSYAALRHNVRALAAGLD

Protein Length: 85

Fln nts: ACGTCATACCCAATACCCAGGGCACAAGTCCCGTGGCTCTCCAAAT_-_ATGGCAGTGCAGCAGGAACGGCCGGTTATGGATCGAAAGAGCGGTTATTGCAGAGCCAATGGAATCTATTACAGCAAAAGGGATCCCATCGATCTTCCTCCGACCACTCAACACTTGGACGTCACCACTTATATTTTTTCCCATCATCACCACGATATGCAGCAGATGGCGTTCATCGACGCCTCTAGTGGCATATCGCTCTCTTATGCAGCCCTCCGCCACAATGTGAGAGCCCTCGCTGCCGGACTGGATGG

Fln Alignment:

HA8LWWM01C84U6___MDRKSGYCRANGIYYSKRDPIDLPPTTQHLDVTTYIFSHHHHDMQQMAFIDASSGISLSYAALRHNVRALAAGL
B8LP93________________VDQQSGFCKANGIYYSKREPVLLPPPHHPLDVITYIFS-LQHNMQQIAFIDGPSGTTLTYSALRLKVRALAAGL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain