SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene164781

Length: 262 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene164781
CGTAACTTCTGTTCAAAAGACCGGACGTTGTATAAGTGTAGAGGAAGGATGGCCTCAACACGGAGTTGGATCAGAGATCTCTGCACAACTTATGGAGAATGCTTTTGATTATTTAGATGCTCCTGTCGTTCGTATTACTGGAGCTGATGTACCCATGCCTTACACAAAGCCTCTTGAGGATGCAGCAATGGTTCAAGTAGATAACATTGTCAATCAGGTCAAGATTTTGTTGGGAAAGAATTAAATAAAAATCCGTAAAGTT

Ace file of the UniGene sp_v3.0_unigene164781 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pyruvate dehydrogenase E1 beta subunit n=1 Tax=Dictyostelium fasciculatum RepID=F4PPG9_9MYCE	-	-	8.0e-25	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Sma3	Pyruvate dehydrogenase E1 component subunit beta, mitochondrial	-	-	2.169e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	Pyruvate dehydrogenase (acetyl-transferring).	EC:1.2.4.1	-	6.518e-22	-

Source	KEGGs	Term	e value	Identity
Sma3	Glycolysis / Gluconeogenesis	00010	6.518e-22	%
Sma3	Citrate cycle (TCA cycle)	00020	6.518e-22	%
Sma3	Valine, leucine and isoleucine biosynthesis	00290	6.518e-22	%
Sma3	Pyruvate metabolism	00620	6.518e-22	%
Sma3	Butanoate metabolism	00650	6.518e-22	%
Sma3	Biosynthesis of phenylpropanoids	01061	6.518e-22	%
Sma3	Biosynthesis of terpenoids and steroids	01062	6.518e-22	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	6.518e-22	%
Sma3	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	6.518e-22	%
Sma3	Biosynthesis of alkaloids derived from histidine and purine	01065	6.518e-22	%
Sma3	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	6.518e-22	%
Sma3	Biosynthesis of plant hormones	01070	6.518e-22	%
Sma3	Metabolic pathways	01100	6.518e-22	%
Sma3	Biosynthesis of secondary metabolites	01110	6.518e-22	%

Source	Gene names
Sma3	At5g50850; CHLREDRAFT_139515; GSVIVT00006965001; GSVIVT00018004001; K16E14.1; MICPUCDRAFT_58821; MICPUN_86033; ODP1; OSJNBa0033D24.29; OSTLU_12625; Os08g0536000; Os09g0509200; OsI_30038; OsI_30042; OsI_31986; OsJ_28086; OsJ_29962; Ot06g02870; P0665C04.10;

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	mitochondrial matrix	GO:0005759	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	pyruvate dehydrogenase (acetyl-transferring) activity	GO:0004739	Molecular Function	-
Sma3	glycolysis	GO:0006096	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Biotin/lipoyl attachment	IPR000089	-	-
Sma3	2-oxo acid dehydrogenase, lipoyl-binding site	IPR003016	-	-
Sma3	Transketolase-like, pyrimidine-binding domain	IPR005475	-	-
Sma3	Transketolase, C-terminal	IPR005476	-	-
Sma3	Transketolase-like, C-terminal	IPR015941	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G50850.1	MAB1 Transketolase family protein chr5:20689671-20692976 FORWARD LENGTH=363	9.0e-22	58%
RefSeq	Arabidopsis thaliana	NP_199898.1	pyruvate dehydrogenase E1 component subunit beta [Arabidopsis thaliana]	1.0e-21	58%
RefSeq	Populus trichocarpa	XP_002304661.1	predicted protein, partial [Populus trichocarpa]	4.0e-23	61%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWJ6

Fln msg: your sequence is shorter than subject: 81 - 378

Fln protein: VTSVQKTGRCISVEEGWPQHGVGSEISAQLMENAFDYLDAPVVRITGADVPMPYTKPLEDAAMVQVDNIVNQVKILLGKN*

Protein Length: 82

Fln nts: CGTAACTTCTGTTCAAAAGACCGGACGTTGTATAAGTGTAGAGGAAGGATGGCCTCAACACGGAGTTGGATCAGAGATCTCTGCACAACTTATGGAGAATGCTTTTGATTATTTAGATGCTCCTGTCGTTCGTATTACTGGAGCTGATGTACCCATGCCTTACACAAAGCCTCTTGAGGATGCAGCAATGGTTCAAGTAGATAACATTGTCAATCAGGTCAAGATTTTGTTGGGAAAGAATTAA___ATAAAAATCCGTAAAGTT

Fln Alignment:

HA8LWWM01BCWBS___SVQKTGRCISVEEGWPQHGVGSEISAQLMENAFDYLDAPVVRITGADVPMPYTKPLEDAAMVQVDNIVNQVK
A9NWJ6________________SVRKTSRLVTVEEGFPQHGIGAEICASVVEESFEYLDAPVERITGADVPMPYAANLERLAVPQVEDIVHASK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain