SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene164737

Length: 332 nt

UniGene Fasta

>sp_v3.0_unigene164737
TATAAAGGCCATCCTATATGATATGTTGGCCGCAGGCACGGACACGTCATCCACAACCATGGAGTGGGCAATGTCCGAATTGTTGAGGAACCCGCCAGTGTTGAAGAAGGTTCAGGACGAGCTGGAACGTGTAGTTGGAAAGGGCCGAATGGTACGTGAATCTGATCTTCCTTCTCTCCCTTACTTACAAGCTGTAGTGAAAGAAACTCTTAGACTCCACGCGGCATCACCCCTTGCCCTTCCCCACTTATCTGTGGAAGCCTGCAATGTGTTGGGCTATGAAATTCCCAGAAACACTCGCGTTTTGGTGAATCTTTGGGCAATCGGAAGGA

Ace file of the UniGene sp_v3.0_unigene164737

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[Q] COG2124 Cytochrome P450	-	-	5.0e-10	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Sma3	Flavonoid 3'-hydroxylase	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Flavonoid 3',5'-hydroxylase.	EC:1.14.13.88	-	1.43e-09	-

Source	KEGGs	Term	e value	Identity
Sma3	Flavonoid biosynthesis	00941	1.43e-09	%
Sma3	Flavone and flavonol biosynthesis	00944	1.43e-09	%
Sma3	Biosynthesis of secondary metabolites	01110	1.43e-09	%

Source	Gene names
Sma3	5'H; 5'h; At1g66540; At2g45550; At5g07990; B1097H10.9; CYP71C9v1; CYP71C9v2; CYP71C9v3; CYP736A4v1; CYP736A5v1; CYP736A6Pv1; CYP75; CYP750A1; CYP75A1; CYP75A12\|F3'5'H1; CYP75A13; CYP75A2; CYP75A3; CYP75A6; CYP75B1; CYP76C4; CYP76G5; CYP80E2; CYP92A; CYP92

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	endoplasmic reticulum membrane	GO:0005789	Cellular Component	-
Sma3	microsome	GO:0005792	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	GO:0016702	Molecular Function	-
Sma3	flavonoid 3'-monooxygenase activity	GO:0016711	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	flavonoid 3',5'-hydroxylase activity	GO:0033772	Molecular Function	-
Sma3	flavonoid biosynthetic process	GO:0009813	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Lipoxygenase, C-terminal	IPR013819	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G45550.1	CYP76C4 cytochrome P450, family 76, subfamily C, polypeptide 4 chr2:18773541-18775654 REVERSE LENGTH=511	3.0e-32	58%
RefSeq	Arabidopsis thaliana	NP_182079.1	cytochrome P450 76C4 [Arabidopsis thaliana]	4.0e-32	58%
RefSeq	Populus trichocarpa	XP_002310011.1	predicted protein [Populus trichocarpa]	6.0e-34	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQV6

Fln msg: Distance to subject end: 104 aas, your sequence is shorter than subject: 110 - 517

Fln protein: IKAILYDMLAAGTDTSSTTMEWAMSELLRNPPVLKKVQDELERVVGKGRMVRESDLPSLPYLQAVVKETLRLHAASPLALPHLSVEACNVLGYEIPRNTRVLVNLWAIGR

Protein Length: 111

Fln nts: TATAAAGGCCATCCTATATGATATGTTGGCCGCAGGCACGGACACGTCATCCACAACCATGGAGTGGGCAATGTCCGAATTGTTGAGGAACCCGCCAGTGTTGAAGAAGGTTCAGGACGAGCTGGAACGTGTAGTTGGAAAGGGCCGAATGGTACGTGAATCTGATCTTCCTTCTCTCCCTTACTTACAAGCTGTAGTGAAAGAAACTCTTAGACTCCACGCGGCATCACCCCTTGCCCTTCCCCACTTATCTGTGGAAGCCTGCAATGTGTTGGGCTATGAAATTCCCAGAAACACTCGCGTTTTGGTGAATCTTTGGGCAATCGGAAGGA

Fln Alignment:

HA8LWWM01C8G9S___IKAILYDMLAAGTDTSSTTMEWAMSELLRNPPVLKKVQDELERVVGKGRMVRESDLPSLPYLQAVVKETLRXXXXXXXXXXXXXVEACNVLGYEIPRNTRVLVNLWAIGR
C0PQV6________________IKSAVYDILSAGSDTSSTSIEWAMSEVLRNPPVLKKIQEELERVVGMGRMVHESDLPRLVYLQAVVKETLRLHPPGPLLLPHISIETCNVLGYKIPSGTRLLVNVWAIGR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain