SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene164725

Length: 308 nt

UniGene Fasta

>sp_v3.0_unigene164725
AAGGCTTCCGAATTGGTTAGTATAAATATTCTAATTTGAATGCTCATTTCTGTAATTTGTAATGTTCATCCATGAGTGGGTGTATTGATGCAGGAGCACACTCAATTGGTGTCTCTCATTGCACTTCATTCGTGAGCAGGCTCTACAACTTCAGCACCACTTTTCCGACGGACCCATCTCTTGATCCTATGCTTGCTGACATACTGAAGAAGAAGTGTCCTCAGGGAAGCCCCAGCAACATCACGACCGTGTTCATGGATACTTATACGCCTGAAACTATCGACAATCTCTACTACAACGGCCTTCTA

Ace file of the UniGene sp_v3.0_unigene164725

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	peroxidase 1 [Scutellaria baicalensis]	-	-	2.0e-13	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	35%

Source	Gene names
Sma3	GSVIVT00022535001; GSVIVT00022537001; VITISV_028562;

Source	GOs	Term	Type	Identity
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002321949.1	predicted protein [Populus trichocarpa]	2.0e-18	45%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NMN9

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 64 aas, your sequence is shorter than subject: 102 - 333

Fln protein: GFRIG*YKYSNLNAHFCNL*CSSMSGCIDAGAHSIGVSHCTSFVSRLYNFSTTFPTDPSLDPMLADILKKKCPQGSPSNITTVFMDTYTPETIDNLYYNGLL

Protein Length: 103

Fln nts: AAGGCTTCCGAATTGGTTAGTATAAATATTCTAATTTGAATGCTCATTTCTGTAATTTGTAATGTTCATCCATGAGTGGGTGTATTGATGCAGGAGCACACTCAATTGGTGTCTCTCATTGCACTTCATTCGTGAGCAGGCTCTACAACTTCAGCACCACTTTTCCGACGGACCCATCTCTTGATCCTATGCTTGCTGACATACTGAAGAAGAAGTGTCCTCAGGGAAGCCCCAGCAACATCACGACCGTGTTCATGGATACTTATACGCCTGAAACTATCGACAATCTCTACTACAACGGCCTTCTA

Fln Alignment:

HA8LWWM01AVHQN___YKYSNLNAHFCNL*CSSMSGCIDAGAHSIGVSHCTSFVSRLYNFSTTFPTDPSLDPMLADILKKKCPQGSPSNITTVFMDTYTPETIDNLYYNGL
A9NMN9________________FTLNQLNFLFASKGLSQTDMVALSGAHTLGFSHCNQISNRIYSFSASTPVDPSLNPSYATQLQQMCPKNVDPTI-AINIDPTTPRQFDNVYYQNL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain