SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene164717

Length: 391 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene164717
AGAACAGTGTTGTCGAGCGTCGCAACCGCACGGTTGTTGAAATGGCTCGTTCCATGTTACAACACAGGAGTGTTCCAAACAAATTTTGGGCTGAAGCAGTATTTACTGTTGTTTACCTTCTTAACCGATCACCTACTCAGGCTGTTAAAGGGAAGACTCCTGAAGAGGTTTGGTCTGGTCGTAAGCCTAAGATCAGTCACCTCAAAGTATTTGGCTCAGTTGCATCTGTTTGGATTCCACCTGCTAAGCACTCTAAGTTGGATTCCAAAAGCCAGAAACTCATGATGATAGGTTACAGTGATCATCACAAGGCCTATAGGCTAATAGATATAGCCACAGGTTGTCTTAGCTTCAGTCAGGATGTAGTATTTGATGAAGACAGAGTATTTTT

Ace file of the UniGene sp_v3.0_unigene164717 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	T26F17.17 n=1 Tax=Arabidopsis thaliana RepID=Q9SFE1_ARATH	-	-	3.0e-35	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Sma3	Copia-type polyprotein	-	-	1.328e-10	-

Source	Gene names
Sma3	At2g15650; At2g17490; B1110B01.4; F11I4_21; F11O6.6; GSVIVT00019821001; H0512B01.8; LOC_Os03g05850; LOC_Os03g26290; LOC_Os03g47410; LOC_Os03g47702; LOC_Os03g56530; LOC_Os03g61660; LOC_Os10g01750; LOC_Os10g04074; LOC_Os10g17570; LOC_Os10g29420; LOC_Os10g41

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	tRNA dihydrouridine synthase activity	GO:0017150	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	rRNA N-glycosylase activity	GO:0030598	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	tRNA processing	GO:0008033	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	negative regulation of translation	GO:0017148	Biological Process	-
Sma3	transposition	GO:0032196	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	tRNA-dihydrouridine synthase	IPR001269	-	-
Sma3	BRCT domain	IPR001357	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Argonaute/Dicer protein, PAZ	IPR003100	-	-
Sma3	Stem cell self-renewal protein Piwi	IPR003165	-	-
Sma3	HhH-GPD domain	IPR003265	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3		IPR010256	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	BTB/POZ	IPR013069	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	Domain of unknown function DUF1785	IPR014811	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	-
Sma3	Peptidase A2A, retrovirus RVP subgroup	IPR018061	-	-
Sma3	Superoxide dismutase, copper/zinc, binding site	IPR018152	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	tRNA-dihydrouridine synthase, conserved site	IPR018517	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: Distance to subject end: 43 aas, your sequence is shorter than subject: 129 - 407

Fln protein: NSVVERRNRTVVEMARSMLQHRSVPNKFWAEAVFTVVYLLNRSPTQAVKGKTPEEVWSGRKPKISHLKVFGSVASVWIPPAKHSKLDSKSQKLMMIGYSDHHKAYRLIDIATGCLSFSQDVVFDEDRVF

Protein Length: 130

Fln nts: AGAACAGTGTTGTCGAGCGTCGCAACCGCACGGTTGTTGAAATGGCTCGTTCCATGTTACAACACAGGAGTGTTCCAAACAAATTTTGGGCTGAAGCAGTATTTACTGTTGTTTACCTTCTTAACCGATCACCTACTCAGGCTGTTAAAGGGAAGACTCCTGAAGAGGTTTGGTCTGGTCGTAAGCCTAAGATCAGTCACCTCAAAGTATTTGGCTCAGTTGCATCTGTTTGGATTCCACCTGCTAAGCACTCTAAGTTGGATTCCAAAAGCCAGAAACTCATGATGATAGGTTACAGTGATCATCACAAGGCCTATAGGCTAATAGATATAGCCACAGGTTGTCTTAGCTTCAGTCAGGATGTAGTATTTGATGAAGACAGAGTATTTTT

Fln Alignment:

HA8LWWM01AS0XV___NSVVERRNRTVVEMARSMLQHRSVPNKFWAEAVFTVVYLLNRSPTQAVKGKTPEEVWSGRKPKISHLKVFGSVASVWIPPAKHSKLDSKSQKLMMIGYSDHHKAYRLIDIATGCLSFSQDVVFDE
B8LKX7________________NGVAERKNRTLMEMARCMLHARNMDPKFWAEAINTATYIVNRTPTIAVKHKTPEEAWSRRKPTVSHFKVFGCDVYVHIPDEKRKKLDRKSHKCIMVGYSETSKAYRVYDPEKNEILIRRDVIFDE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain