SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene164714

Length: 130 nt

UniGene Fasta

>sp_v3.0_unigene164714
ATCGATGTGTTGTTGATGGTGTTCAGATGATTGTGGAAGAGATGAACATTCTCACAACAGTTTTCTTGCGATATGATAATGAGAAAATATACTATCCAAACTCGGCACTTGCTACAAAACCCATTAGCAA

Ace file of the UniGene sp_v3.0_unigene164714

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	mechanosensitive channel of small conductance-like 5 [Arabidopsis thaliana] dbj\|BAB02647.1\| unnamed protein product [Arabidopsis thaliana] gb\|AEE75568.1\| mechanosensitive channel of small conductance-like 5 [Arabidopsis thaliana]	-	-	2.0e-12	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Sma3	Mechanosensitive ion channel	-	-	3.081e-11	-

Source	Gene names
Sma3	AT5G12080; At1g53470; At1g78610; At2g17010; At5g12080; At5g19520; F14F18.230; F22G10.15; GSVIVT00002410001; GSVIVT00015523001; GSVIVT00016479001; GSVIVT00016480001; GSVIVT00032255001; GSVIVT00036182001; GSVIVT00036185001; MSCL14; MSCL15; MXC9.3; OJ1725_H0

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	mechanically-gated ion channel activity	GO:0008381	Molecular Function	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-
Sma3	detection of mechanical stimulus	GO:0050982	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Mechanosensitive ion channel MscS	IPR006685	-	-
Sma3	Membrane protein, At2g17000, predicted	IPR016688	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G14810.1	MSL5 mechanosensitive channel of small conductance-like 5 chr3:4971223-4974216 REVERSE LENGTH=881	3.0e-17	78%
RefSeq	Arabidopsis thaliana	NP_001189895.1	mechanosensitive channel of small conductance-like 5 [Arabidopsis thaliana]	4.0e-17	78%
RefSeq	Populus trichocarpa	XP_002319752.1	predicted protein [Populus trichocarpa]	1.0e-20	90%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AA09

Fln msg: Distance to subject end: 123 aas, your sequence is shorter than subject: 42 - 290

Fln protein: RCVVDGVQMIVEEMNILTTVFLRYDNEKIYYPNSALATKPIS

Protein Length: 43

Fln nts: ATCGATGTGTTGTTGATGGTGTTCAGATGATTGTGGAAGAGATGAACATTCTCACAACAGTTTTCTTGCGATATGATAATGAGAAAATATACTATCCAAACTCGGCACTTGCTACAAAACCCATTAGCAA

Fln Alignment:

HA8LWWM01B3CME___RCVVDGVQMIVEEMNILTTVFLRYDNEKIYYPNSALATKPIS
D5AA09________________RCSIEGVQMVVEEMNILTTVFLRYDNEKIWYPNTVLATKPIS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain