SustainPineDB

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Assembly info
Unigenes
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene164680

Length: 381 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene164680
TCGCCGACAACGCGTTCTCCGTCGCCTCCTCCGCAAGTACAGAGAGGCCGGCAAGATTGACAAGCACCTCTACCACTCGCTCTACTTGAAAGTCCAAGGGAAATGTCTACAAGAACAAGCGCCAACTCATTGACGCCATTCACAAGCTCAAGGCTGAGGCCAACCGAACCAAGAACCTCAACGACCAAATGGAGGTTCGCCGTGTCAAGAACAAGGCCATGCGCGAGCGTCGTGCTGGTCGATTGGCCGAGAAGCGTGGTGCTCTGGCCGCCATCGAGCACGAGGATACCGATGCGCTTAACGCCACTGGTCCTTAAGGGAGGAGGGCCCGTTTGACCCAGTTCGCAGTGATAGCCTTTTTGCATTTTCTCTTTACGCGAC

Ace file of the UniGene sp_v3.0_unigene164680 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribosomal protein L19 n=1 Tax=Schizophyllum commune H4-8 RepID=D8QKF9_SCHCM	-	-	5.0e-21	69%
FL-Next	sp=Ribosomal protein L19; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	48%
Sma3	Ribosomal protein L19	-	-	2.031e-10	-

Source	Gene names
Sma3	CHLREDRAFT_195590; MICPUCDRAFT_49436; Ot07g03420; RPL19; RPL19B;

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L19/L19e	IPR000196	-	-
Sma3	Ribosomal protein L19/L19e, domain 1	IPR015972	-	-
Sma3	Ribosomal protein L19/L19e, domain 3	IPR015974	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G16780.1	Ribosomal protein L19e family protein chr3:5708982-5710249 FORWARD LENGTH=209	2.0e-15	57%
RefSeq	Arabidopsis thaliana	NP_188300.1	60S ribosomal protein L19-2 [Arabidopsis thaliana]	2.0e-15	57%
RefSeq	Populus trichocarpa	XP_002318334.1	predicted protein [Populus trichocarpa]	3.0e-15	57%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NRT3

Fln msg: Overlapping hits, possible frame ERROR between 118 and 99, your sequence is shorter than subject: 106 - 205

Fln protein: RRQRVLRRLLRKYREAGKIDKHLYHSLYLKVQxxxxxxxxRQLIDAIHKLKAEANRTKNLNDQMEVRRVKNKAMRERRAGRLAEKRGALAAIEHEDTDALNATGP*

Protein Length: 107

Fln nts: TCGCCGACAACGCGTTCTCCGTCGCCTCCTCCGCAAGTACAGAGAGGCCGGCAAGATTGACAAGCACCTCTACCACTCGCTCTACTTGAAAGTCCAAxxxxxxxxxxxxxxxxxxxxxxxxCGCCAACTCATTGACGCCATTCACAAGCTCAAGGCTGAGGCCAACCGAACCAAGAACCTCAACGACCAAATGGAGGTTCGCCGTGTCAAGAACAAGGCCATGCGCGAGCGTCGTGCTGGTCGATTGGCCGAGAAGCGTGGTGCTCTGGCCGCCATCGAGCACGAGGATACCGATGCGCTTAACGCCACTGGTCCTTAAGGGAGGAGGGCCCGTTTGACCCAGTTCGCAGTGATAGCCTTTTTGCATTTTCTCTTTACGCGAC

Fln Alignment:

HA8LWWM01A39G4___EAGKIDKHLYHSLYLKVQxxxxxxxRQLIDAIHKLKAEANRTKNLNDQMEVRRVKNKAMRERRAGRLAEKRGALAAIEHEDTDALNATGP
A9NRT3________________ESKKIDKHMYHDMYMKVKxxxxxxxRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER---LAQGPTETTPAPTQTAP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain