SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene164675

Length: 237 nt

UniGene Fasta

>sp_v3.0_unigene164675
ACAAATGTGTCTGTTAGAAGGTTCTTATGAGTACTATCATTATCTTCAAGATGACTTCGATGACAGTGGTTGGGGATGTGCGTATCGATCTTTACAAACTATAATCTCATGGTTCAGGCTTCAACATTACACTTCGGTTGATGTGCCATCTCATAGAAAAATACAAGAAACTCTTGTAGAAATTGGTGACAAGGAGCCTTCATTTACTGGATCGCGGGAATGGATTGGAGCTATTGA

Ace file of the UniGene sp_v3.0_unigene164675

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Probable Ufm1-specific protease n=4 Tax=Arabidopsis RepID=UFSP_ARATH	-	-	8.0e-35	86%
FL-Next	sp=Probable Ufm1-specific protease; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	86%
Sma3	UfSP	-	-	5.358e-10	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Acting on peptide bonds (peptide hydrolases), Cysteine endopeptidases.	EC:3.4.22.-	-	1.91e-06	-

Source	Gene names
Sma3	At3g48380; CHLREDRAFT_137016; GSVIVT00015915001; LOC_Os12g18760; MICPUCDRAFT_60788; Os12g0285500; OsI_38012; OsJ_35781; PHYPADRAFT_170312; POPTRDRAFT_733487; RCOM_1507680; T29H11.100; VITISV_002653;

Source	GOs	Term	Type	e value	Identity
Sma3	cysteine-type peptidase activity	GO:0008234	Molecular Function	0.0	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2	IPR012462	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G48380.3	Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 chr3:17916468-17920099 FORWARD LENGTH=653	2.00386e-43	86%
RefSeq	Arabidopsis thaliana	NP_974402.1	putative Ufm1-specific protease [Arabidopsis thaliana]	2.00386e-43	86%
RefSeq	Populus trichocarpa	XP_002321659.1	predicted protein [Populus trichocarpa]	2.8026e-45	86%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9STL8

Fln msg: Distance to subject end: 120 aas, your sequence is shorter than subject: 78 - 645

Fln protein: QMCLLEGSYEYYHYLQDDFDDSGWGCAYRSLQTIISWFRLQHYTSVDVPSHRKIQETLVEIGDKEPSFTGSREWIGAI

Protein Length: 79

Fln nts: ACAAATGTGTCTGTTAGAAGGTTCTTATGAGTACTATCATTATCTTCAAGATGACTTCGATGACAGTGGTTGGGGATGTGCGTATCGATCTTTACAAACTATAATCTCATGGTTCAGGCTTCAACATTACACTTCGGTTGATGTGCCATCTCATAGAAAAATACAAGAAACTCTTGTAGAAATTGGTGACAAGGAGCCTTCATTTACTGGATCGCGGGAATGGATTGGAGCTATTGA

Fln Alignment:

HA8LWWM01EP1M6___LLEGSYEYYHYLQDDFDDSGWGCAYRSLQTIISWFRLQHYTSVDVPSHRKIQETLVEIGDKEPSFTGSREWIGAI
Q9STL8________________IIQGSYEYYHYLQDGFDDSGWGCAYRSLQTIISWFRLQHYTSISVPSHREIQQTLVEIGDKDPSFVGSREWIGAI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain