SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene164549

Length: 323 nt

UniGene Fasta

>sp_v3.0_unigene164549
AGACACACCTCCGCTTCTTCACTCAGCTTAGTGGCAGAGCTGTGCATCTTCCATATGGCTCTTCCAATTACATACTCCTCCATGGTACCGTTGCTACTGATTGTTTCTATCTGCATCGTCTCAGAATCAGGTCGAGCCAATGCATTGAGAGGCCTGAGCCAGGATTACTACAAGCAAACGTGCCCATTCTACGAATGCACTTCCACGACTGCTTCATTCGGGGCTGCGATGCATCGGTGCTGTTAGACTCCACTCAAAGCAATGAAGCAGAGAAAGACGCGCCACCCAACGTCTCACTTCGTGCCTTCTATGTACTAGACGAT

Ace file of the UniGene sp_v3.0_unigene164549

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peroxidase (Fragment) n=4 Tax=Glycine max RepID=Q9ZRG6_SOYBN	-	-	6.0e-17	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Sma3	Peroxidase	-	-	5.418e-24	-

Source	ECs	Term	Type	e value	Identity
Sma3	Peroxidase.	EC:1.11.1.7	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Phenylalanine metabolism	00360	%
Sma3	Methane metabolism	00680	%
Sma3	Phenylpropanoid biosynthesis	00940	%
Sma3	Biosynthesis of phenylpropanoids	01061	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	AT3G32980; At3g01190; At3g21770; At3g32980; At4g16270; At4g33420; At5g42180; At5g51890; B1386G10.20; FCAALL.329; GSVIVT00003644001; GSVIVT00004228001; GSVIVT00006924001; GSVIVT00011734001; GSVIVT00013661001; GSVIVT00015486001; GSVIVT00022533001; GSVIVT000

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	hydrogen peroxide catabolic process	GO:0042744	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G51890.1	Peroxidase superfamily protein chr5:21091163-21092335 REVERSE LENGTH=322	1.0e-20	76%
RefSeq	Arabidopsis thaliana	NP_200002.3	peroxidase 66 [Arabidopsis thaliana]	2.0e-20	76%
RefSeq	Populus trichocarpa	XP_002327640.1	predicted protein [Populus trichocarpa]	1.0e-18	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P1P4

Fln msg: Distance to subject end: 217 aas, atg_distance in limit (1-15): atg_distance = 1, No stop codon before M and M found is too far from subject M, your sequence is shorter than subject: 43 - 324

Fln protein: MHFHDCFIRGCDASVLLDSTQSNEAEKDAPPNVSLRAFYVLDD

Protein Length: 44

Fln nts: AGACACACCTCCGCTTCTTCACTCAGCTTAGTGGCAGAGCTGTGCATCTTCCATATGGCTCTTCCAATTACATACTCCTCCATGGTACCGTTGCTACTGATTGTTTCTATCTGCATCGTCTCAGAATCAGGTCGAGCCAATGCATTGAGAGGCCTGAGCCAGGATTACTACAAGCAAACGTGCCCATTCTACGAATGCACTTCCACGACTGCTTCATTCGGGGCTGCGATGCATCGGTGCTGTTAGACTCCACTCAAAGCAATGAAGCAGAGAAAGACGCGCCACCCAACGTCTCACTTCGTGCCTTCTATGTACTAGACGAT

Fln Alignment:

HA8LWWM01DUUBS___PILRMHFHDCFIRGCDASVLLDSTQSNEAEKDAPPNVSLRAFYVLD
A9P1P4________________PLLRMHFHDCFVRGCDGSVLLNSTKSRKAEKEAAPNLTLRGFQVID

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain