SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene164544

Length: 313 nt

UniGene Fasta

>sp_v3.0_unigene164544
ATTCTGTGCGATGCGGAGGTGGGTGTCATAGTCTTTTCAGCAACTGGCAAGCATTACGAATACGCCAGTTCCAGCATCAAATCGGTCATCGAACGATATGGTAAGCACAACATGAAGTTGGTGGAAGACACCCAATTCAACGCGTCTGAGTGTGAGAATGTGTGGCAGAAGGAGGTGATACAGATGAAACAAGAAATGAAATACTTGCAACATTATAACAGACAGTTAATGGGAACAGATCTGTCGACATTGAGCCTGAAAGACGTCCATCATTTAGAGCAACTGTTAGACATGAGCCTTCATCGTGTACAAG

Ace file of the UniGene sp_v3.0_unigene164544

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Mads box protein, putative n=1 Tax=Ricinus communis RepID=B9RX62_RICCO	-	-	3.0e-20	50%
FL-Next	tr=Dal1 protein; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	41%

Source	Gene names
Sma3	GSVIVT00011492001; GSVIVT00015065001; PMADS14; POPTRDRAFT_801173; POPTRDRAFT_804358; RCOM_0818130;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	glycine hydroxymethyltransferase activity	GO:0004372	Molecular Function	-
Sma3	pyridoxal phosphate binding	GO:0030170	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	glycine metabolic process	GO:0006544	Biological Process	-
Sma3	L-serine metabolic process	GO:0006563	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Serine hydroxymethyltransferase	IPR001085	-	-
Sma3	Transcription factor, MADS-box	IPR002100	-	-
Sma3	Transcription factor, K-box	IPR002487	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002313958.1	predicted protein [Populus trichocarpa]	6.0e-27	50%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q40765

Fln msg: Distance to subject end: 122 aas, your sequence is shorter than subject: 104 - 261

Fln protein: ILCDAEVGVIVFSATGKHYEYASSSIKSVIERYGKHNMKLVEDTQFNASECENVWQKEVIQMKQEMKYLQHYNRQLMGTDLSTLSLKDVHHLEQLLDMSLHRVQ

Protein Length: 105

Fln nts: ATTCTGTGCGATGCGGAGGTGGGTGTCATAGTCTTTTCAGCAACTGGCAAGCATTACGAATACGCCAGTTCCAGCATCAAATCGGTCATCGAACGATATGGTAAGCACAACATGAAGTTGGTGGAAGACACCCAATTCAACGCGTCTGAGTGTGAGAATGTGTGGCAGAAGGAGGTGATACAGATGAAACAAGAAATGAAATACTTGCAACATTATAACAGACAGTTAATGGGAACAGATCTGTCGACATTGAGCCTGAAAGACGTCCATCATTTAGAGCAACTGTTAGACATGAGCCTTCATCGTGTACAAG

Fln Alignment:

HA8LWWM01DTRUH___ILCDAEVGVIVFSATGKHYEYASSSIKSVIERYGKHNMKLVEDTQFNASECENVWQKEVIQMKQEMKYLQHYNRQLMGTDLSTLSLKDVHHLEQLLDMSL
Q40765________________VLCDAEVALIIFSTRGKLYEFASSSMNKTLERYEKCSYAMQDTTGVSDREAQN-WHQEVTKLKGKVELLQRSQRHLLGEDLGPLNVKELQQLERQLEVAL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain