SustainPineDB

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Assembly info
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SSRs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene164522

Length: 280 nt

UniGene Fasta

>sp_v3.0_unigene164522
GGACACGAAACGATCTGCTTATGGTACTGCCCTAGACTCGTTTTCTCAAACGATTTACGGTCTGGTCCAGTGCACCAGAGATCTAACCACAGACGACTGCAACACATGTCTAGCCTTCTCAATCAATACAATATTCACATCGAATCCCACAGCAGGAGTTCAGTATTGGAGCCGAAGCTGCATACTTCGTTATGAAATATATCCCTTCTATAATTCGTCCGTGCTTCCAGCAGTCCCTGTGGAAGGTTCCGCTAATCATACACAGATCAAGTATTCACAG

Ace file of the UniGene sp_v3.0_unigene164522

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	receptor-like protein kinase 4 [Arabidopsis thaliana]	-	-	9.0e-10	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Gnk2-homologous domain	IPR002902	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G23180.1	CRK10, RLK4 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 chr4:12138171-12140780 FORWARD LENGTH=669	3.0e-13	46%
RefSeq	Arabidopsis thaliana	NP_567679.2	cysteine-rich receptor-like protein kinase 10 [Arabidopsis thaliana]	3.0e-13	46%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P2M9

Fln msg: STOP codon was not found. Distance to subject end: 18 aas, your sequence is shorter than subject: 93 - 268

Fln protein: DTKRSAYGTALDSFSQTIYGLVQCTRDLTTDDCNTCLAFSINTIFTSNPTAGVQYWSRSCILRYEIYPFYNSSVLPAVPVEGSANHTQIKYSQ

Protein Length: 94

Fln nts: GGACACGAAACGATCTGCTTATGGTACTGCCCTAGACTCGTTTTCTCAAACGATTTACGGTCTGGTCCAGTGCACCAGAGATCTAACCACAGACGACTGCAACACATGTCTAGCCTTCTCAATCAATACAATATTCACATCGAATCCCACAGCAGGAGTTCAGTATTGGAGCCGAAGCTGCATACTTCGTTATGAAATATATCCCTTCTATAATTCGTCCGTGCTTCCAGCAGTCCCTGTGGAAGGTTCCGCTAATCATACACAGATCAAGTATTCACAG

Fln Alignment:

HA8LWWM01EBDAV___TKRSAYGTALDSFSQTIYGLVQCTRDLTTDDCNTCLAFSINTIFTSNP-TAGVQYWSRSCILRYEIYPFYNSSVL
A9P2M9________________TTRSALGTALDSFSQTIYGLAQCTRDLSTDDCTQCLSYSINKIFKSYPGYAGVQYWSQSCIVRYEIYPFFNSTAL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain