SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene164505

Length: 285 nt

UniGene Fasta

>sp_v3.0_unigene164505
GTGTGGGGTATTCACAGAGACCCCGCTAAGTGGGAACGCCCCCTGGAATTCGAGCCGGAAAGGTTTATGAATTCTTGTAGCCCAGACGTGAGTGGGCATGATTTCAAATATATGCCGTTTGGGTATGGGAGGAGAGCCTGCCCGGGCGTGTTTATGGCCATGCGCATGCTCAAGTTCACTGTGGCGAAACTGTTGCACAGTTTCGATTGGAGCATTCCACCCGGAGTCGAGGGAGTCGATATGAGTGAAGGGCGTGCCGTGACGCTATCGAAAGAGGTTCCGTTA

Ace file of the UniGene sp_v3.0_unigene164505

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Flavonoid 3-hydroxylase (Fragment) n=3 Tax=Pseudotsuga RepID=C6FBL7_PSEMZ	-	-	1.0e-22	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Sma3	Flavonoid 3', 5'-hydroxylase-like protein	-	-	1.027e-07	-

Source	ECs	Term	Type	e value	Identity
Sma3	N-methylcoclaurine 3'-monooxygenase.	EC:1.14.13.71	-	5.406e-09	-

Source	KEGGs	Term	e value	Identity
Sma3	Isoquinoline alkaloid biosynthesis	00950	5.406e-09	%
Sma3	Metabolic pathways	01100	5.406e-09	%
Sma3	Biosynthesis of secondary metabolites	01110	5.406e-09	%

Source	Gene names
Sma3	AT4g12300; AT4g12310; AT4g12320; At4g12300; At4g12300/T4C9_140; At4g12310; At4g12320; B1168A08.5; CYP706C5; CYP76T6; CYP80C2; CYP82J1v1; CYP82K1; CYP83E8; F3'H; GSVIVT00001136001; GSVIVT00006017001; GSVIVT00006019001; GSVIVT00007266001; GSVIVT00007269001;

Source	GOs	Term	Type	Identity
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	GC-rich sequence DNA-binding factor	IPR012890	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G12310.1	CYP706A5 cytochrome P450, family 706, subfamily A, polypeptide 5 chr4:7310598-7312522 REVERSE LENGTH=520	2.0e-27	50%
RefSeq	Arabidopsis thaliana	NP_192968.3	cytochrome P450, family 706, subfamily A, polypeptide 5 [Arabidopsis thaliana]	3.0e-27	50%
RefSeq	Populus trichocarpa	XP_002329896.1	predicted protein [Populus trichocarpa]	1.0e-28	53%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLA5

Fln msg: STOP codon was not found. Distance to subject end: 13 aas, your sequence is shorter than subject: 95 - 528

Fln protein: VWGIHRDPAKWERPLEFEPERFMNSCSPDVSGHDFKYMPFGYGRRACPGVFMAMRMLKFTVAKLLHSFDWSIPPGVEGVDMSEGRAVTLSKEVPL

Protein Length: 96

Fln nts: GTGTGGGGTATTCACAGAGACCCCGCTAAGTGGGAACGCCCCCTGGAATTCGAGCCGGAAAGGTTTATGAATTCTTGTAGCCCAGACGTGAGTGGGCATGATTTCAAATATATGCCGTTTGGGTATGGGAGGAGAGCCTGCCCGGGCGTGTTTATGGCCATGCGCATGCTCAAGTTCACTGTGGCGAAACTGTTGCACAGTTTCGATTGGAGCATTCCACCCGGAGTCGAGGGAGTCGATATGAGTGAAGGGCGTGCCGTGACGCTATCGAAAGAGGTTCCGTTA

Fln Alignment:

HA8LWWM01BNPTI___WGIHRDPAKWERPLEFEPERFMNSCSPDVSGHDFKYMPFGYGRRACPGVFMAMRMLKFTVAKLLHSFDWSIPPGVEGVDMSEGRAVTLSKEVPL
B8LLA5________________WGIHRDPAVWERPLEFEPERFLNSSSPDLNGHDFKYIPFGYGRRACPGMWVALRMLLLTVGRLLQSFDWSIPDGIEGVDMNEGRALTLHKAVPL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain