UniGene Name: sp_v3.0_unigene164401
Length: 177 nt
This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense
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>sp_v3.0_unigene164401
G |
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Source | Descriptions | Term | Type | e value | Identity |
---|---|---|---|---|---|
AutoFact | NAC secondary wall thickening promoting factor 1 n=1 Tax=Medicago truncatula RepID=D8WJD8_MEDTR | - | - | 8.0e-25 | 88% |
FL-Next | tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). | - | - | 0.0 | 88% |
Sma3 | NAC domain protein, IPR003441 | - | - | 0.0 | - |
Source | Gene names |
---|---|
Sma3 | 131L1.6; 134P10.2; 9C20.2; AT4g10350; AT4g36160; At1g12260; At1g32770; At1g33280; At1g54330; At1g56010; At1g65910; At1g71930; At1g76420; At1g79580; At2g18060; At2g46770; At3g03200; At3g04060; At3g17730; At3g29035; At3g61910; At4g10350; At4g36160; At5g0768 |
Source | GOs | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | nucleus | GO:0005634 | Cellular Component | 0.0 | - |
Sma3 | membrane | GO:0016020 | Cellular Component | 0.0 | - |
Sma3 | DNA binding | GO:0003677 | Molecular Function | 0.0 | - |
Sma3 | sequence-specific DNA binding transcription factor activity | GO:0003700 | Molecular Function | 0.0 | - |
Sma3 | metallopeptidase activity | GO:0008237 | Molecular Function | 0.0 | - |
Sma3 | transcription activator activity | GO:0016563 | Molecular Function | 0.0 | - |
Sma3 | specific transcriptional repressor activity | GO:0016566 | Molecular Function | 0.0 | - |
Sma3 | transcription regulator activity | GO:0030528 | Molecular Function | 0.0 | - |
Sma3 | protein homodimerization activity | GO:0042803 | Molecular Function | 0.0 | - |
Sma3 | regulation of transcription, DNA-dependent | GO:0006355 | Biological Process | 0.0 | - |
Sma3 | proteolysis | GO:0006508 | Biological Process | 0.0 | - |
Sma3 | auxin mediated signaling pathway | GO:0009734 | Biological Process | 0.0 | - |
Sma3 | response to cytokinin stimulus | GO:0009735 | Biological Process | 0.0 | - |
Sma3 | response to abscisic acid stimulus | GO:0009737 | Biological Process | 0.0 | - |
Sma3 | response to brassinosteroid stimulus | GO:0009741 | Biological Process | 0.0 | - |
Sma3 | lignin biosynthetic process | GO:0009809 | Biological Process | 0.0 | - |
Sma3 | secondary cell wall biogenesis | GO:0009834 | Biological Process | 0.0 | - |
Sma3 | anther dehiscence | GO:0009901 | Biological Process | 0.0 | - |
Sma3 | meristem initiation | GO:0010014 | Biological Process | 0.0 | - |
Sma3 | fruit dehiscence | GO:0010047 | Biological Process | 0.0 | - |
Sma3 | primary shoot apical meristem specification | GO:0010072 | Biological Process | 0.0 | - |
Sma3 | xylem development | GO:0010089 | Biological Process | 0.0 | - |
Sma3 | formation of organ boundary | GO:0010160 | Biological Process | 0.0 | - |
Sma3 | organ boundary specification between lateral organs and the meristem | GO:0010199 | Biological Process | 0.0 | - |
Sma3 | response to chitin | GO:0010200 | Biological Process | 0.0 | - |
Sma3 | secondary shoot formation | GO:0010223 | Biological Process | 0.0 | - |
Sma3 | GO:0045449 | Biological Process | 0.0 | - | |
Sma3 | leaf development | GO:0048366 | Biological Process | 0.0 | - |
Sma3 | regulation of timing of organ formation | GO:0048504 | Biological Process | 0.0 | - |
Sma3 | lateral root development | GO:0048527 | Biological Process | 0.0 | - |
Source | InterPros | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK | IPR000550 | - | 0.0 | - |
Sma3 | Ribosomal protein L24e-related | IPR000988 | - | 0.0 | - |
Sma3 | Peptidase M20 | IPR002933 | - | 0.0 | - |
Sma3 | No apical meristem (NAM) protein | IPR003441 | - | 0.0 | - |
Sma3 | Cytochrome c oxidase biogenesis protein Cmc1-like | IPR013892 | - | 0.0 | - |
Sma3 | Glycoside hydrolase, family 9, active site | IPR018221 | - | 0.0 | - |
Source | Species | ID | Description | e value | Identity |
---|---|---|---|---|---|
ATG | Arabidoptis thaliana | AT2G46770.1 | NST1, ANAC043 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein chr2:19220917-19222822 REVERSE LENGTH=365 | 2.0e-32 | 88% |
RefSeq | Arabidopsis thaliana | NP_182200.2 | NAC domain-containing protein 43 [Arabidopsis thaliana] | 3.0e-32 | 88% |
RefSeq | Populus trichocarpa | XP_002320897.1 | NAC domain protein, IPR003441, partial [Populus trichocarpa] | 1.0e-31 | 86% |
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Fln status: Internal
Fln database: coniferopsida.fasta
Fln subject: B8LLZ9
Fln msg: Distance to subject end: 251 aas, your sequence is shorter than subject: 59 - 392
Fln protein:
G
Protein Length:
60
Fln nts:
G
Fln Alignment:
HA8LWWM01DCTPR___GTRTNRATAAGFWKATGRDKIIFMNCKRIGMRKTLVFYTGRAPHGQKTEWIMHEYRLDD
B8LLZ9________________GTRTNRATAAGFWKATGRDKAIHTNLKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLDD
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain