SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene164363

Length: 233 nt

UniGene Fasta

>sp_v3.0_unigene164363
CCTGTCGGATGCATTCCACTGCAGCGGGTGCTGACAATGGATGGAGGTTGCCAACAGAATCTCAACGAATATGCCGTCAAGTTTAATGTGGCTATGAAAAACCTCATCACGGATCTAAATTCAAAACTACCAGGAGCTAACTTTGTCTTTGCGGATGGTTACGATTTCTTCAGCAAGCTTATAGATAATCCCCGAGCTTATGGGTTCAATAATTCTGATACACCTTGCTGCAG

Ace file of the UniGene sp_v3.0_unigene164363

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Zinc finger protein, putative n=1 Tax=Ricinus communis RepID=B9RLX9_RICCO	-	-	3.0e-19	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%

Source	Gene names
Sma3	Os06g0257600; OsI_22422; OsJ_20868; P0603C10.15; P0624H09.38; RCOM_1471860;

Source	GOs	Term	Type	e value	Identity
Sma3	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	0.0	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Lipase, GDSL	IPR001087	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G74460.1	GDSL-like Lipase/Acylhydrolase superfamily protein chr1:27988150-27989765 REVERSE LENGTH=366	4.0e-24	49%
RefSeq	Arabidopsis thaliana	NP_177586.1	GDSL esterase/lipase [Arabidopsis thaliana]	5.0e-24	49%
RefSeq	Populus trichocarpa	XP_002318602.1	predicted protein [Populus trichocarpa]	2.0e-22	49%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NXM8

Fln msg: Distance to subject end: 71 aas, your sequence is shorter than subject: 77 - 377

Fln protein: PVGCIPLQRVLTMDGGCQQNLNEYAVKFNVAMKNLITDLNSKLPGANFVFADGYDFFSKLIDNPRAYGFNNSDTPCC

Protein Length: 78

Fln nts: CCTGTCGGATGCATTCCACTGCAGCGGGTGCTGACAATGGATGGAGGTTGCCAACAGAATCTCAACGAATATGCCGTCAAGTTTAATGTGGCTATGAAAAACCTCATCACGGATCTAAATTCAAAACTACCAGGAGCTAACTTTGTCTTTGCGGATGGTTACGATTTCTTCAGCAAGCTTATAGATAATCCCCGAGCTTATGGGTTCAATAATTCTGATACACCTTGCTGCAG

Fln Alignment:

HA8LWWM01BJGYV___PVGCIPLQRVLTMDGGCQQNLNEYAVKFNVAMKNLITDLNSKLPGANFVFADGYDFFSKLIDNPRAYGFNNSDTPCC
A9NXM8________________PLGCIPLQRVLTSDGSCQQNLNEYAVKFNAATKNLVTDLSSKLPAASFVFADGYTFFTKLIENPQAYGFDNGDTPCC

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain