SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene164350

Length: 245 nt

UniGene Fasta

>sp_v3.0_unigene164350
GAAAGTCTAATGAGAGAAGCTGGTGTCTTCTTTATGGTGACCTGCTTATCATGTCTGATGTGGATGAGATTCCCAGTCAACGGACAATTAACCTCCTTAGGTGGTAGACAACAATATACCATCAGTCATGCATCTTGCAACTGAGGAATTATTTGTACTCTTTTGAGTTTCCAGTTGACTATAACAGTTGGCGTGCATCAGTCCTACATTTATCAGCGTCATACAAGCTATGATCATAGGTCGTC

Ace file of the UniGene sp_v3.0_unigene164350

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	beta-1,4-N-acetylglucosaminyltransferase like protein [Arabidopsis thaliana] gb\|AAG51993.1\|AC012563_3 unknown protein; 88937-90309 [Arabidopsis thaliana] gb\|AAL85033.1\| unknown protein [Arabidopsis thaliana] dbj\|BAE98635.1\| hypothetical protein [Arabidops	-	-	3.0e-13	74%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	58%
Sma3	Acetylglucosaminyltransferase, putative	-	-	1.189e-10	-

Source	Gene names
Sma3	At1g12990; At1g67880; At3g01620; At3g26445; At3g27540; At5g14480; F18O22_270; F3F19.2; F4P13.16; GSVIVT00016939001; GSVIVT00020645001; GSVIVT00030768001; LOC_Os12g41780; OJ1126_D09.18; OJ1126_D09.20-1; OSIGBa0116M22.7; OSJNBa0044K18.7; Os02g0594900; Os02g

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	GO:0003830	Molecular Function	-
Sma3	protein N-linked glycosylation	GO:0006487	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 17	IPR006813	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G67880.1	beta-1,4-N-acetylglucosaminyltransferase family protein chr1:25454081-25455453 REVERSE LENGTH=390	7.0e-18	74%
RefSeq	Arabidopsis thaliana	NP_176955.1	beta-1,4-N-acetylglucosaminyltransferase like protein [Arabidopsis thaliana]	9.0e-18	74%
RefSeq	Populus trichocarpa	XP_002324640.1	predicted protein [Populus trichocarpa]	3.0e-18	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9PCR7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 109 aas, your sequence is shorter than subject: 77 - 363

Fln protein: KSNERSWCLLYGDLLIMSDVDEIPSQRTINLLRW*TTIYHQSCILQLRNYLYSFEFPVDYNSWRASVLHLSASYKL*

Protein Length: 78

Fln nts: GAAAGTCTAATGAGAGAAGCTGGTGTCTTCTTTATGGTGACCTGCTTATCATGTCTGATGTGGATGAGATTCCCAGTCAACGGACAATTAACCTCCTTAGGTGGTAGACAACAATATACCATCAGTCATGCATCTTGCAACTGAGGAATTATTTGTACTCTTTTGAGTTTCCAGTTGACTATAACAGTTGGCGTGCATCAGTCCTACATTTATCAGCGTCATACAAGCTATGATCATAGGTCGTC

Fln Alignment:

HA8LWWM01COYX6___RSWCLLYGDLLIMSDVDEIPSQRTINLLRW*TTIYHQSCILQLRNYLYSFEFPVDYNSWRASV
A9PCR7________________RSSGISYGDLIIMSDADEIPSPHTLKLLQWCDEIPH-AMHLELKHYMYSFEFPVDYSSWRATI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain