SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene164273

Length: 359 nt

UniGene Fasta

>sp_v3.0_unigene164273
CTGTGAGAGACAATCACGAGAAGACAGGAAGGCATTGCTATGTACAAGGAGATTTCTTGGAGGAGGATGCTGCCTTTCAGTCAAGGCCACGTGGTGGTCGAAAGAGAAAAACATTTACAATCAACACTCTTTTGAAAAAGAGAGTAGCATGTCCAGATCGAAGCAGCACTGTTCTTGACAGTGGATCATCCTTTTTAGATTGGTTAATTTCAAGCAGCAGGGAATGATTAAGATGATGGACAACCTAGTACATGATACCATCGTCTGATTTCACTTGTATGGTTTTCTTGCACCAGATTGGAGTGGTAAAATGTAGAACAGCATTTCCAGTGCATGTTACAAGATTCAGATTGGTGATT

Ace file of the UniGene sp_v3.0_unigene164273

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	52%

Source	Gene names
Sma3	RCOM_1147820;

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Zinc finger, C2H2-type/integrase, DNA-binding	IPR013087	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G72050.2	TFIIIA transcription factor IIIA chr1:27115082-27117228 FORWARD LENGTH=412	6.0e-11	54%
RefSeq	Arabidopsis thaliana	NP_565033.1	transcription factor IIIA [Arabidopsis thaliana]	5.0e-11	54%
RefSeq	Populus trichocarpa	XP_002327353.1	predicted protein, partial [Populus trichocarpa]	7.0e-15	60%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D7TQ66

Fln msg: your sequence is shorter than subject: 75 - 390

Fln protein: VRDNHEKTGRHCYVQGDFLEEDAAFQSRPRGGRKRKTFTINTLLKKRVACPDRSSTVLDSGSSFLDWLISSSRE*

Protein Length: 76

Fln nts: CTGTGAGAGACAATCACGAGAAGACAGGAAGGCATTGCTATGTACAAGGAGATTTCTTGGAGGAGGATGCTGCCTTTCAGTCAAGGCCACGTGGTGGTCGAAAGAGAAAAACATTTACAATCAACACTCTTTTGAAAAAGAGAGTAGCATGTCCAGATCGAAGCAGCACTGTTCTTGACAGTGGATCATCCTTTTTAGATTGGTTAATTTCAAGCAGCAGGGAATGA___TTAAGATGATGGACAACCTAGTACATGATACCATCGTCTGATTTCACTTGTATGGTTTTCTTGCACCAGATTGGAGTGGTAAAATGTAGAACAGCATTTCCAGTGCATGTTACAAGATTCAGATTGGTGATT

Fln Alignment:

HA8LWWM01CCQNA___VRDNHEKTGRHCYVQGDFLEEDAAFQSRPRGGRKRKTFTINTLLKKRVACPDRSSTVLDSGSSFLDWLISSSRE
D7TQ66________________VRDNHEKTGCHVYTHGDFEELDEQFRLRPKGGRKRKSPPIEALLRKRVTPPSQSDSILCQGPEYLSWLLSDAED

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain