SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene164242

Length: 202 nt

UniGene Fasta

>sp_v3.0_unigene164242
TTCTATTCTCAGCATCAAAGGTTTATGGCATCCTTATGCTTTGGGAGGCCATGGAGGTGTGGCTGTTCCTAATGATGTTGACCTTGGGAATGATGGAGAGCATGATTGCCCTCGGGCAATGCTTTTAACAGGACCAAATATGGGAGGCAAGTCAACACTTTTGCGTGCCACCTGTTTAACAGTCATAATGGCTCAGCTTGGA

Ace file of the UniGene sp_v3.0_unigene164242

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MutS homolog 7 [Arabidopsis thaliana]	-	-	9.0e-16	62%
FL-Next	sp=DNA mismatch repair protein MSH7; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	62%
Sma3	MutS homolog 7	-	-	3.168e-09	-

Source	Gene names
Sma3	At3g24495; GSVIVT00038394001; MICPUN_88779; MOB24.2; MSH6-2; MSH7; OJ1174_D05.15; Os01g0180600; OsI_00652; P0666G04.3; PHYPADRAFT_80908; POPTRDRAFT_930874; RCOM_1053350; VITISV_034626; mus2;

Source	GOs	Term	Type	Identity
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	mismatched DNA binding	GO:0030983	Molecular Function	-
Sma3	mismatch repair	GO:0006298	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	DNA mismatch repair protein MutS, C-terminal	IPR000432	-	-
Sma3	DNA mismatch repair protein MutS-like, N-terminal	IPR007695	-	-
Sma3	DNA mismatch repair protein MutS, core	IPR007696	-	-
Sma3	DNA mismatch repair protein MutS, connector	IPR007860	-	-
Sma3	DNA mismatch repair protein MutS-homologue MSH6	IPR015536	-	-
Sma3	DNA mismatch repair protein MutS, N-terminal	IPR016151	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G24495.1	MSH7, MSH6-2, ATMSH7 MUTS homolog 7 chr3:8912418-8918086 REVERSE LENGTH=1109	2.0e-20	62%
RefSeq	Arabidopsis thaliana	NP_850630.1	DNA mismatch repair protein Msh6-2 [Arabidopsis thaliana]	2.0e-20	62%
RefSeq	Populus trichocarpa	XP_002331157.1	predicted protein [Populus trichocarpa]	1.0e-24	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SMV7

Fln msg: Distance to subject end: 233 aas, your sequence is shorter than subject: 67 - 1109

Fln protein: SILSIKGLWHPYALGGHGGVAVPNDVDLGNDGEHDCPRAMLLTGPNMGGKSTLLRATCLTVIMAQLG

Protein Length: 68

Fln nts: TTCTATTCTCAGCATCAAAGGTTTATGGCATCCTTATGCTTTGGGAGGCCATGGAGGTGTGGCTGTTCCTAATGATGTTGACCTTGGGAATGATGGAGAGCATGATTGCCCTCGGGCAATGCTTTTAACAGGACCAAATATGGGAGGCAAGTCAACACTTTTGCGTGCCACCTGTTTAACAGTCATAATGGCTCAGCTTGGA

Fln Alignment:

HA8LWWM01CSTPR___ILSIKGLWHPYALGGHGGVAVPNDVDLGNDGEHDC---PRAMLLTGPNMGGKSTLLRATCLTVIMAQLG
Q9SMV7________________ILKIQGLWHPFAVAADGQLPVPNDILLGEARRSSGSIHPRSLLLTGPNMGGKSTLLRATCLAVIFAQLG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain