SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene164175

Length: 183 nt

UniGene Fasta

>sp_v3.0_unigene164175
ATTGGATGCTCACAAGGATGGTTTTGTGCTTCTCTTTTTCATCCTTCTTCAAGGAATATTCGTAAACTTGCTAAGGTGAAAATTCAAAAATGCCAAGGTCGATGGGAGAACTCCTTATTCCTAACGGCATAAGGTCCATCGTTTGCCTCAATTTACCCAGCTTTTCTGGTGGCTTAAATCCTT

Ace file of the UniGene sp_v3.0_unigene164175

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Diacylglycerol kinase, alpha, putative n=1 Tax=Ricinus communis RepID=B9SIF7_RICCO	-	-	2.0e-18	72%
FL-Next	tr=Diacylglycerol kinase, alpha, putative; Ricinus communis (Castor bean).	-	-	0.0	72%

Source	Gene names
Sma3	RCOM_1255930;

Source	GOs	Term	Type	e value	Identity
Sma3	diacylglycerol kinase activity	GO:0004143	Molecular Function	0.0	-
Sma3	activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway	GO:0007205	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Diacylglycerol kinase, accessory domain	IPR000756	-	-
Sma3	Diacylglycerol kinase, catalytic domain	IPR001206	-	-
Sma3	Diacylglycerol kinase, plant	IPR016961	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G20900.1	DGK5, ATDGK5 diacylglycerol kinase 5 chr2:8989412-8992798 REVERSE LENGTH=509	7.0e-19	67%
RefSeq	Arabidopsis thaliana	NP_001031381.1	diacylglycerol kinase 5 [Arabidopsis thaliana]	9.0e-19	67%
RefSeq	Populus trichocarpa	XP_002330386.1	predicted protein [Populus trichocarpa]	4.0e-16	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9SIF7

Fln msg: Overlapping hits, possible frame ERROR between 111 and 108, Distance to subject end: 161 aas, your sequence is shorter than subject: 61 - 526

Fln protein: IGCSQGWFCASLFHPSSRNIRKLAKVKIQKCQGRWxxxLIPNGIRSIVCLNLPSFSGGLNP

Protein Length: 62

Fln nts: ATTGGATGCTCACAAGGATGGTTTTGTGCTTCTCTTTTTCATCCTTCTTCAAGGAATATTCGTAAACTTGCTAAGGTGAAAATTCAAAAATGCCAAGGTCGATGGxxxxxxxxxCTTATTCCTAACGGCATAAGGTCCATCGTTTGCCTCAATTTACCCAGCTTTTCTGGTGGCTTAAATCCTT

Fln Alignment:

HA8LWWM01DEXEG___IGCSQGWFCASLFHPSSRNIRKLAKVKIQKCQGRWExLLIPNGIRSIVCLNLPSFSGGLNP
B9SIF7________________LGCTQGWFCASLFHPTSRNIAQLAKVKIMKTKGQWExLIIPSSIRSIVCLNLPSFSGGLNP

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain