SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene164139

Length: 248 nt

UniGene Fasta

>sp_v3.0_unigene164139
TGCCGGGCCCTTCAGGATGGATTACTGATGAACATCAAAGCAAGAAACCAAATCCATGGATTGTTTGCCCAGTAACTCAAGTAGAAGAAACCAAGATTATATTAAGGATGGTGCCCATCTGGTTCTTATGCTTAATCTTTGGAATGACAGCATTGGAGAGCAATTCGCTCTTCGTAAAGCAGGGCAGCACCATGGATAGACGTATGGGTCCCCATTTCCAAATCCCGCCAGCTTCTCTTCTGGCCTTT

Ace file of the UniGene sp_v3.0_unigene164139

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative peptide/nitrate transporter [Arabidopsis thaliana] sp\|Q9M1I2.1\|PTR46_ARATH RecName: Full=Probable peptide/nitrate transporter At3g54450 emb\|CAB77565.1\| oligopeptide transporter-like protein [Arabidopsis thaliana] gb\|AEE79233.1\| putative peptide/n	-	-	2.0e-14	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%

Source	Gene names
Sma3	LOC_Os03g60850; OSJNBb0081B07.12; Os03g0823500; OsI_14122; OsJ_13171;

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	oligopeptide transport	GO:0006857	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Oligopeptide transporter	IPR000109	-	0.0	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G54450.1	Major facilitator superfamily protein chr3:20158534-20161937 FORWARD LENGTH=555	5.0e-19	50%
RefSeq	Arabidopsis thaliana	NP_974431.2	putative peptide/nitrate transporter [Arabidopsis thaliana]	6.0e-19	50%
RefSeq	Populus trichocarpa	XP_002297740.1	predicted protein [Populus trichocarpa]	8.0e-22	54%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ68

Fln msg: Distance to subject end: 192 aas, your sequence is shorter than subject: 82 - 407

Fln protein: PGPSGWITDEHQSKKPNPWIVCPVTQVEETKIILRMVPIWFLCLIFGMTALESNSLFVKQGSTMDRRMGPHFQIPPASLLAF

Protein Length: 83

Fln nts: TGCCGGGCCCTTCAGGATGGATTACTGATGAACATCAAAGCAAGAAACCAAATCCATGGATTGTTTGCCCAGTAACTCAAGTAGAAGAAACCAAGATTATATTAAGGATGGTGCCCATCTGGTTCTTATGCTTAATCTTTGGAATGACAGCATTGGAGAGCAATTCGCTCTTCGTAAAGCAGGGCAGCACCATGGATAGACGTATGGGTCCCCATTTCCAAATCCCGCCAGCTTCTCTTCTGGCCTTT

Fln Alignment:

HA8LWWM01DOHIR___SGWITDEHQSKKPNPWIVCPVTQVEETKIILRMVPIWFLCLIFGMTALESN-SLFVKQGSTMDRRMGPHFQIPPASLLAF
B8LQ68________________SEWNTDTQGSAKPNPWKVCTVTQVEETKLILRMVPIWFSSLTFGLAAVSQNATFFIRQGHTMDRSMGSHFKIPAVSLGVF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain