SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene164086

Length: 219 nt

UniGene Fasta

>sp_v3.0_unigene164086
GTTGCAGTGCGTCGAGATCATCGCCTTCATGGGAGAGTGTCCTCTGCACAGGGAGCATCAAGCGACTGACCAGGATCTCCGAGATCCCGTCTATGGCTGCGTTGCGCATATTTACGCCTTGCAGCAACAGGTTGCAAGTTTGCAGGCGGAGTTGGCATTCATGCAAGCAGAGCTGGCAAGCCGCGTGTCATCCGGATCAGCATCGGCCTCCACGATTTA

Ace file of the UniGene sp_v3.0_unigene164086

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LOB domain-containing protein 18 [Arabidopsis thaliana] sp\|O22131.2\|LBD18_ARATH RecName: Full=LOB domain-containing protein 18; AltName: Full=ASYMMETRIC LEAVES 2-like protein 20; Short=AS2-like protein 20 gb\|AAL38036.1\|AF447891_1 LOB DOMAIN 18 [Arabidopsi	-	-	3.0e-07	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%

Source	Gene names
Sma3	GSVIVT00026357001; LOC_Os03g14270; Os03g0246900; OsI_10739; OsJ_10128; PHYPADRAFT_18666; PHYPADRAFT_25219; PHYPADRAFT_48669; PHYPADRAFT_7278; POPTRDRAFT_244069; POPTRDRAFT_409907; POPTRDRAFT_572115; RCOM_1612280;

Source	InterPros	Term	Type	Identity
Sma3	Lateral organ boundaries, LOB	IPR004883	-	-
Sma3	Uncharacterised conserved protein UCP038127, LOB	IPR017394	-	-
Sma3	DNA methylase, N-4 cytosine-specific, conserved site	IPR017985	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G45420.1	LBD18 LOB domain-containing protein 18 chr2:18718601-18720445 FORWARD LENGTH=262	2.0e-11	51%
RefSeq	Arabidopsis thaliana	NP_850436.1	LOB domain-containing protein 18 [Arabidopsis thaliana]	3.0e-11	51%
RefSeq	Populus trichocarpa	XP_002301295.1	predicted protein, partial [Populus trichocarpa]	6.0e-12	78%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A9D3

Fln msg: Distance to subject end: 96 aas, your sequence is shorter than subject: 72 - 219

Fln protein: LQCVEIIAFMGECPLHREHQATDQDLRDPVYGCVAHIYALQQQVASLQAELAFMQAELASRVSSGSASASTI

Protein Length: 73

Fln nts: GTTGCAGTGCGTCGAGATCATCGCCTTCATGGGAGAGTGTCCTCTGCACAGGGAGCATCAAGCGACTGACCAGGATCTCCGAGATCCCGTCTATGGCTGCGTTGCGCATATTTACGCCTTGCAGCAACAGGTTGCAAGTTTGCAGGCGGAGTTGGCATTCATGCAAGCAGAGCTGGCAAGCCGCGTGTCATCCGGATCAGCATCGGCCTCCACGATTTA

Fln Alignment:

HA8LWWM01A3JXS___LRDPVYGCVAHIYALQQQVASLQAELAFMQAEL
D5A9D3________________LRDPVYGCVAHIFALQQQVASLQAELTFVQAQL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain