SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene164041

Length: 238 nt

UniGene Fasta

>sp_v3.0_unigene164041
GGAGAAATCAGAGTTGATTGCCATAGCTTTGGTCCATCTGGATTGAAGAAACACCCAGATGAAGGTGTGATAGCAGGTTACACCTGCAGGCTGAACAGAACAGAGAGGCATAAATCTATCGTTCTCTTATCGGCATTGAACCAAAGCCTGATAAACGTAGTCCATCATTTTCATCTCAGACAGGGCTATCATTACATGAACCTTCCTAGAGGATTTGCAGTGTTCAATCACTATAAAT

Ace file of the UniGene sp_v3.0_unigene164041

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin-protein ligase n=1 Tax=Cucumis melo subsp. melo RepID=E5GC73_CUCME	-	-	6.0e-25	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Sma3	Ubiquitin-protein ligase, putative	-	-	5.293e-06	-

Source	Gene names
Sma3	At1g27200; At5g40720; B1203H11.32-1; B1203H11.32-2; GSVIVT00020580001; GSVIVT00028930001; OSJNBa0073J19.9-1; OSJNBa0073J19.9-2; OSJNBa0091F23.17-1; OSJNBa0091F23.17-2; Os08g0121900; OsI_27644; OsJ_25865; PHYPADRAFT_151210; PHYPADRAFT_190433; POPTRDRAFT_10

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Domain of unknown function DUF23	IPR008166	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G27330.1	zinc finger (C3HC4-type RING finger) family protein chr3:10116950-10120516 REVERSE LENGTH=913	4.0e-27	58%
RefSeq	Arabidopsis thaliana	NP_189369.1	C3H4 type zinc finger protein [Arabidopsis thaliana]	6.0e-27	58%
RefSeq	Populus trichocarpa	XP_002300081.1	predicted protein [Populus trichocarpa]	7.0e-29	64%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLQ9

Fln msg: Distance to subject end: 81 aas, your sequence is shorter than subject: 79 - 595

Fln protein: GEIRVDCHSFGPSGLKKHPDEGVIAGYTCRLNRTERHKSIVLLSALNQSLINVVHHFHLRQGYHYMNLPRGFAVFNHYK

Protein Length: 80

Fln nts: GGAGAAATCAGAGTTGATTGCCATAGCTTTGGTCCATCTGGATTGAAGAAACACCCAGATGAAGGTGTGATAGCAGGTTACACCTGCAGGCTGAACAGAACAGAGAGGCATAAATCTATCGTTCTCTTATCGGCATTGAACCAAAGCCTGATAAACGTAGTCCATCATTTTCATCTCAGACAGGGCTATCATTACATGAACCTTCCTAGAGGATTTGCAGTGTTCAATCACTATAAAT

Fln Alignment:

HA8LWWM01C9WJK___GEIRVDCHSFGPSGLKKHPDEGVIAGYTCRLNRTERHKSIVLLSALNQSLINVVHHFHLRQGYHYMNLPRGFAVFNHYK
B8LLQ9________________GQVSINCRNFGPSNLKSHPPQGVTQGYTCRQKLEQRHKSIVFLDALSPSLRNAIHHFELKPGYKTMRLTSSEAVINHYK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain