SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene164018

Length: 280 nt

UniGene Fasta

>sp_v3.0_unigene164018
TGAGTCAAGGTCACATAATGTAGGAATCAAAATGTAATATAATATTTGCTCATTTTTCTGATATAATGGATGTCTTGAATTTGTTAGTGTGGACTCGGGGATGCATTCAGGTGCAGTAGTTGCCCCTACAAAGGACTTATCTCCTTTCAAACTTGGGGAAAACTCAAAAGATATTCCGGTTTTGCCGTTCCAAATGTCATAAGAATTTCAAAATGAAACGTAACCCTTGAAAGGTGAAGTGGACTAAAGCATACAGAAAGCTACACGGAAAAGAGCTTAC

Ace file of the UniGene sp_v3.0_unigene164018

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[J] COG2075 Ribosomal protein L24E	-	-	2.0e-14	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%

Source	Gene names
Sma3	At2g44860; B1075D06.1-1; CHLREDRAFT_83083; GSVIVT00021667001; MICPUCDRAFT_13718; MICPUN_107328; OSTLU_119514; Os01g0514000; Os07g0292800; OsI_02167; OsI_25678; OsJ_01992; OsJ_23889; Ot02g00330; P0446G09.102; P0504D03.37-1; P0656C04.124; PHYPADRAFT_18928;

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-
Sma3	ribosome biogenesis	GO:0042254	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L24e-related	IPR000988	-	-
Sma3	Phosphoglycerate/bisphosphoglycerate mutase, active site	IPR001345	-	-
Sma3	Protein of unknown function DUF868, plant	IPR008586	-	-
Sma3	TRASH	IPR011017	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Histidine phosphatase superfamily, clade-1	IPR013078	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G44860.1	Ribosomal protein L24e family protein chr2:18501034-18502128 REVERSE LENGTH=159	2.0e-17	83%
RefSeq	Arabidopsis thaliana	NP_001078059.1	large subunit ribosomal protein L24e [Arabidopsis thaliana]	2.0e-17	83%
RefSeq	Populus trichocarpa	XP_002328175.1	predicted protein [Populus trichocarpa]	5.0e-19	89%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NKH8

Fln msg: Distance to subject end: 108 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 53 - 172

Fln protein: LPLQRTYLLSNLGKTQKIFRFCRSKCHKNFKMKRNP*KVKWTKAYRKLHGKEL

Protein Length: 54

Fln nts: TGAGTCAAGGTCACATAATGTAGGAATCAAAATGTAATATAATATTTGCTCATTTTTCTGATATAATGGATGTCTTGAATTTGTTAGTGTGGACTCGGGGATGCATTCAGGTGCAGTAGTTGCCCCTACAAAGGACTTATCTCCTTTCAAACTTGGGGAAAACTCAAAAGATATTCCGGTTTTGCCGTTCCAAATGTCATAAGAATTTCAAAATGAAACGTAACCCTTGAAAGGTGAAGTGGACTAAAGCATACAGAAAGCTACACGGAAAAGAGCTTAC

Fln Alignment:

HA8LWWM01BVGQH___KIFRFCRSKCHKNFKMKRNP*KVKWTKAYRKLHGKEL
A9NKH8________________KIFRFCRSKCHKNFKMKRNPRKVKWTKAYRKLHGKEL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain