SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene163991

Length: 195 nt

UniGene Fasta

>sp_v3.0_unigene163991
TGCAAACGGAGAGCCATGAAGACAGTCGCAGGGGTTCAAGGTGTGGTCTCTGTAGCGATTGACGACACGGACAAGAAGATGACTGTAATTGGGGATGCAGATCCGGTGTGCGTGACGACTAGTCTCAGAAAAATCGGATTCGCTGAGTTGGTGAGCGTCGGATCTTCTAAAGAACCAGAGAAGAAGCCTGATGAC

Ace file of the UniGene sp_v3.0_unigene163991

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00403, HMA, Heavy-metal-associated domain	-	-	2.0e-06	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%

Source	Gene names
Sma3	POPTRDRAFT_289431;

Source	GOs	Term	Type	e value	Identity
Sma3	metal ion binding	GO:0046872	Molecular Function	0.0	-
Sma3	metal ion transport	GO:0030001	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Heavy metal-associated domain, HMA	IPR006121	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G52770.1	Copper transport protein family chr5:21389766-21390189 FORWARD LENGTH=111	2.0e-12	49%
RefSeq	Arabidopsis thaliana	NP_200089.1	copper transport family protein [Arabidopsis thaliana]	2.0e-12	49%
RefSeq	Populus trichocarpa	XP_002327496.1	predicted protein, partial [Populus trichocarpa]	1.0e-20	60%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NMX0

Fln msg: Distance to subject end: 76 aas, atg_distance in limit (1-15): atg_distance = 16, your sequence is shorter than subject: 60 - 156

Fln protein: MKTVAGVQGVVSVAIDDTDKKMTVIGDADPVCVTTSLRKIGFAELVSVGSSKEPEKKPDD

Protein Length: 61

Fln nts: TGCAAACGGAGAGCC_-_ATGAAGACAGTCGCAGGGGTTCAAGGTGTGGTCTCTGTAGCGATTGACGACACGGACAAGAAGATGACTGTAATTGGGGATGCAGATCCGGTGTGCGTGACGACTAGTCTCAGAAAAATCGGATTCGCTGAGTTGGTGAGCGTCGGATCTTCTAAAGAACCAGAGAAGAAGCCTGATGAC

Fln Alignment:

HA8LWWM01B74GG___CKRRAMKTVAGVQGVVSVAIDDTDKKMTVIGDADPVCVTTSLRKIGFAELVSVGSSKEPEKKP
A9NMX0________________CVRRAMETLSGIEGVVSIAVDEKNKQITVIGDADPVSLTASLRKFGFAELVSVGPSKEPEKKP

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain