SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene163951

Length: 339 nt

UniGene Fasta

>sp_v3.0_unigene163951
ATCCGTTCTGTTAGATGACACAGCAAATTTTACAGGGGAAAAGACAGCAGTTCCCAACAACAATTCCCTCAGGGGCTTTGACGTTGTGGACAACATCAAGGCAGCAGTAGAGAGCGCATGCAACGCAACAGTTTCTTGTGCTGACATTCTTGCCATTGCTGCAGAGCGATCAGTCGTACTGTCCAGTGGTCCATCGTGGACTATACAGTTAGGAAGACGAGATAGCACCACTGCAAATGCAACTCTTCCTAACACAGCCATTCCCGCACCAACAGACAATGTTTCCACAATTATAACAAAGTTCCAAAATGTGGGACTTTCTGTCACCGATGTAGTTGC

Ace file of the UniGene sp_v3.0_unigene163951

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	peroxidase [Litchi chinensis]	-	-	4.0e-34	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Sma3	Peroxidase	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Peroxidase.	EC:1.11.1.7	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Phenylalanine metabolism	00360	%
Sma3	Methane metabolism	00680	%
Sma3	Phenylpropanoid biosynthesis	00940	%
Sma3	Biosynthesis of phenylpropanoids	01061	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	At1g44970; At1g49570; At2g18150; At2g38390; At4g16270; At5g05340; At5g06720; At5g06730; At5g58390; F14J22.19; F27F5.6; F8D23.7; FBP5; FCAALL.329; FLXPER1; GSVIVT00009699001; GSVIVT00014550001; GSVIVT00015157001; GSVIVT00015158001; GSVIVT00015159001; GSVIV

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	hydrogen peroxide catabolic process	GO:0042744	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Alpha-N-acetylglucosaminidase	IPR007781	-	-
Sma3	GCN5-like 1	IPR009395	-	-
Sma3	Thymidylate kinase, conserved site	IPR018095	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G05340.1	Peroxidase superfamily protein chr5:1579142-1580819 REVERSE LENGTH=324	4.00001e-40	58%
RefSeq	Arabidopsis thaliana	NP_196153.1	peroxidase 52 [Arabidopsis thaliana]	5.0e-40	58%
RefSeq	Populus trichocarpa	XP_002312317.1	predicted protein [Populus trichocarpa]	4.99997e-41	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NN21

Fln msg: Distance to subject end: 140 aas, your sequence is shorter than subject: 112 - 324

Fln protein: SVLLDDTANFTGEKTAVPNNNSLRGFDVVDNIKAAVESACNATVSCADILAIAAERSVVLSSGPSWTIQLGRRDSTTANATLPNTAIPAPTDNVSTIITKFQNVGLSVTDVV

Protein Length: 113

Fln nts: ATCCGTTCTGTTAGATGACACAGCAAATTTTACAGGGGAAAAGACAGCAGTTCCCAACAACAATTCCCTCAGGGGCTTTGACGTTGTGGACAACATCAAGGCAGCAGTAGAGAGCGCATGCAACGCAACAGTTTCTTGTGCTGACATTCTTGCCATTGCTGCAGAGCGATCAGTCGTACTGTCCAGTGGTCCATCGTGGACTATACAGTTAGGAAGACGAGATAGCACCACTGCAAATGCAACTCTTCCTAACACAGCCATTCCCGCACCAACAGACAATGTTTCCACAATTATAACAAAGTTCCAAAATGTGGGACTTTCTGTCACCGATGTAGTTGC

Fln Alignment:

HA8LWWM01AVM7Y___SVLLDDTANFTGEKTAVPNNNSLRGFDVVDNIKAAVESACNATVSCADILAIAAERSVVLSSGPSWTIQLGRRDSTTANATLPNTAIPAPTDNVSTIITKFQNVGLSVTDVV
A9NN21________________SVLLSNSANFTGEQT---NTSSLRGFGVVDDMKAAVENECSATVSCADILAIAAERSVSMSGGPSWNVQLGRRDSTTANATLVKTAFASPTDSLSTIITKFQKLGFSVTDVV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain