SustainPineDB

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Assembly info
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SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene163921

Length: 230 nt

UniGene Fasta

>sp_v3.0_unigene163921
GAAGGCAGCAGCTGAGGGATCAAAGACTGTTGCCGCAGACTTGGCAGCAGGAGGCATCACACTATCACTAAATGAGAATGACAGAGGAGATCCACAACGTCTAAACAATAGGGAGTTGCTGAGGCAGAACTTGGATTATGCGTTCGATATGTTCACTATTTATGTGCTTACATTATCTATCTTCCCAGGTTTCCTATCAGAAGATACAGGAAAACATCAGTTGGGTTCAT

Ace file of the UniGene sp_v3.0_unigene163921

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	equilibrative nucleoside transporter 4 [Arabidopsis thaliana] gb\|AAL25097.1\|AF426401_1 putative equilibrative nucleoside transporter ENT4 [Arabidopsis thaliana] emb\|CAB81055.1\| putative protein [Arabidopsis thaliana] gb\|AEE82482.1\| equilibrative nucleosid	-	-	5.0e-11	53%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	69%
Sma3	Equilibrative nucleoside transporter	-	-	1.327e-22	-

Source	Gene names
Sma3	AT4g05110; At4g05110; At4g05120; At4g05130; At4g05140; ENT3; ENT4; ENT6; GSVIVT00011005001; GSVIVT00011010001; GSVIVT00013173001; GSVIVT00013175001; GSVIVT00029215001; OSJNBa0058I18.40; OSJNBa0058I18.41; Os07g0557100; Os07g0557200; OsI_26455; OsI_26456; O

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	ribonuclease H activity	GO:0004523	Molecular Function	-
Sma3	nucleoside transmembrane transporter activity	GO:0005337	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	nucleoside transport	GO:0015858	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribonuclease H domain	IPR002156	-	-
Sma3	Equilibrative nucleoside transporter	IPR002259	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G05130.1	ATENT4, ENT4 equilibrative nucleoside transporter 4 chr4:2636875-2638965 REVERSE LENGTH=418	3.0e-15	63%
RefSeq	Arabidopsis thaliana	NP_192422.1	equilibrative nucleoside transporter 4 [Arabidopsis thaliana]	4.0e-15	63%
RefSeq	Populus trichocarpa	XP_002325685.1	equilibrative nucleoside transporter, partial [Populus trichocarpa]	3.0e-20	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5AZ51

Fln msg: Distance to subject end: 120 aas, your sequence is shorter than subject: 76 - 401

Fln protein: KAAAEGSKTVAADLAAGGITLSLNENDRGDPQRLNNRELLRQNLDYAFDMFTIYVLTLSIFPGFLSEDTGKHQLGS

Protein Length: 77

Fln nts: GAAGGCAGCAGCTGAGGGATCAAAGACTGTTGCCGCAGACTTGGCAGCAGGAGGCATCACACTATCACTAAATGAGAATGACAGAGGAGATCCACAACGTCTAAACAATAGGGAGTTGCTGAGGCAGAACTTGGATTATGCGTTCGATATGTTCACTATTTATGTGCTTACATTATCTATCTTCCCAGGTTTCCTATCAGAAGATACAGGAAAACATCAGTTGGGTTCAT

Fln Alignment:

HA8LWWM01A7RCL___KAAAEGSKTVAADLAAGGITLSLNENDRGDPXXXXXXXXXXXXXDYAFDMFTIYVLTLSIFPGFLSEDTGKHQLGS
A5AZ51________________KAASEGSKTVSADLAAGGIQTTGAEKDPEQPERLSNKQLLLQNIDYAIDLFLIYILTLSIFPGFLSEDTGSHSLGS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain