SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene163918

Length: 302 nt

UniGene Fasta

>sp_v3.0_unigene163918
ATCCGACCGCTAGTTTTCCTCTAGTGATCGCAGAATCGACGAGGAACCCTCTGTGACATTTCCTTCGTCCAGCATGTGGGCACATAGAATCAGCCATGGCTGTGCTCCTTCATTCCCTTGCTTATCTACCCCGGGATGCCTAGAGGAGGTTTCAACCATGGAATTTGATCGTCTGCCTCGGCTTGTCCGACAAGGCCGTCAATATCACTCTCACCACGGATGTAGGGTTGCAGCTCCTCCATGCCACACAACCAGCCCGAGGAGGTGGTCGATACTGTCATGGTCTTGTTGCACACATACTT

Ace file of the UniGene sp_v3.0_unigene163918

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Carboxy-terminal binding protein n=1 Tax=Larix gmelinii RepID=B3XZL7_9CONI	-	-	9.0e-16	74%
FL-Next	tr=Carboxy-terminal binding protein; Larix gmelinii.	-	-	0.0	74%
Sma3	C-terminal binding protein	-	-	1.167e-08	-

Source	Gene names
Sma3	ANGUSTIFOLIA; At1g01510; F22L4.6; GSVIVT00026896001; IAN; LgAN; MpAN; PHYPADRAFT_125702; PHYPADRAFT_21718; POPTRDRAFT_409848; POPTRDRAFT_572304; Ppan2-1; RCOM_1616510; VITISV_022824; an2-2; shortMpAN;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	GO:0016616	Molecular Function	-
Sma3	cofactor binding	GO:0048037	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding	IPR006140	-	-
Sma3	Myb DNA-binding domain, plants	IPR006447	-	-
Sma3		IPR014778	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G01510.1	AN NAD(P)-binding Rossmann-fold superfamily protein chr1:187235-189836 FORWARD LENGTH=636	5.0e-16	64%
RefSeq	Arabidopsis thaliana	NP_563629.1	Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana]	6.0e-16	64%
RefSeq	Populus trichocarpa	XP_002302606.1	predicted protein, partial [Populus trichocarpa]	2.0e-15	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B3XZL7

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 514 aas, your sequence is shorter than subject: 100 - 646

Fln protein: PTASFPLVIAESTRNPL*HFLRPACGHIESAMAVLLHSLAYLPRDA*RRFQPWNLIVCLGLSDKAVNITLTTDVGLQLLHATQPARGGGRYCHGLVAHIL

Protein Length: 101

Fln nts: ATCCGACCGCTAGTTTTCCTCTAGTGATCGCAGAATCGACGAGGAACCCTCTGTGACATTTCCTTCGTCCAGCATGTGGGCACATAGAATCAGCCATGGCTGTGCTCCTTCATTCCCTTGCTTATCTACCCCGGGATGCCTAGAGGAGGTTTCAACCATGGAATTTGATCGTCTGCCTCGGCTTGTCCGACAAGGCCGTCAATATCACTCTCACCACGGATGTAGGGTTGCAGCTCCTCCATGCCACACAACCAGCCCGAGGAGGTGGTCGATACTGTCATGGTCTTGTTGCACACATACTT

Fln Alignment:

HA8LWWM01AUMWK___RPACGHIESAMAVLLHSLAYLPRDA*RRFQPWNLIVCLGLSDKAVNITLTTDVGLQLLH
B3XZL7________________RIADGRIESAMAVLLHSLAYLPRAAQRRLQPWQLILCLGSSDKAVDSALASDLGLQLLH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain