SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene163869

Length: 245 nt

UniGene Fasta

>sp_v3.0_unigene163869
TTCATTGGAATGGCATATCTTCATCATAACTGCTCTCCCGCTATTGTTCATAGCGATCTAAAACCTTCCAACGTTTTATTGGATGAGACGATGACGGCCCATGTTGGAGATTTCGGTATTTCATGCCTCGTGATATCTGCAGAAGGGCAGGACGATTCAACAGCAGCAACCTCAGTGGACACCTCAAGTCTTGTGATAGGATCGGTTGGTTACATTGCACCAGAATATGGTATAGGAGGGCGCCC

Ace file of the UniGene sp_v3.0_unigene163869

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative protein kinase Xa21, receptor type precursor [Oryza sativa Japonica Group]	-	-	5.0e-14	51%
FL-Next	tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	51%

Source	Gene names
Sma3	At2g24130; GSVIVT00010796001; GSVIVT00017170001; GSVIVT00025178001; GSVIVT00025191001; GSVIVT00038849001; LOC_Os11g07060; OJ1740_D06.39; Os09g0423200; Os11g0171800; OsI_21948; OsI_21949; OsI_21950; OsI_31411; OsI_35281; OsI_35293; OsJ_20379; OsJ_20380; Os

Source	GOs	Term	Type	Identity
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Glutathione peroxidase	IPR000889	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR012335	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G24130.1	Leucine-rich receptor-like protein kinase family protein chr2:10258148-10261220 FORWARD LENGTH=980	3.0e-17	55%
RefSeq	Arabidopsis thaliana	NP_179990.1	putative leucine-rich repeat transmembrane protein kinase [Arabidopsis thaliana]	4.0e-17	55%
RefSeq	Populus trichocarpa	XP_002317696.1	predicted protein [Populus trichocarpa]	2.0e-18	53%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q19AV8

Fln msg: Distance to subject end: 122 aas, your sequence is shorter than subject: 81 - 998

Fln protein: FIGMAYLHHNCSPAIVHSDLKPSNVLLDETMTAHVGDFGISCLVISAEGQDDSTAATSVDTSSLVIGSVGYIAPEYGIGGR

Protein Length: 82

Fln nts: TTCATTGGAATGGCATATCTTCATCATAACTGCTCTCCCGCTATTGTTCATAGCGATCTAAAACCTTCCAACGTTTTATTGGATGAGACGATGACGGCCCATGTTGGAGATTTCGGTATTTCATGCCTCGTGATATCTGCAGAAGGGCAGGACGATTCAACAGCAGCAACCTCAGTGGACACCTCAAGTCTTGTGATAGGATCGGTTGGTTACATTGCACCAGAATATGGTATAGGAGGGCGCCC

Fln Alignment:

HA8LWWM01DCXAR___GMAYLHHNCSPAIVHSDLKPSNVLLDETMTAHVGDFGISCLVISAEGQXXXXXXXXXXXXXLVIGSVGYIAPEY
Q19AV8________________GLAYLHHGCVPAIVHRDVKSNNILLDEDYVAHVADFGVAKILQSC--------ARGADSMSAIAGSYGYIAPEY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain