SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene163867

Length: 268 nt

UniGene Fasta

>sp_v3.0_unigene163867
CAGAACTCACCCTCTCTTCAAAATGTCTCTCAAGAAGCAAACTACCTCTAACCTCGCCACCAAGTCCACCAAGAGAGGAAGAAACGAACTCACTGAAGAACAAAGACAAGAAATCAAGGAAGCCTTCGATCTTTTCGACACTGATGGCTCTGGTAGAATTGATGCTAAGGAATTGAAGGTTGCCATGAGAGCCCTCGGCTTCGAACCCAAGAAGGAAGAAGTTAAGAGAATGATTGCTGAAGTCGACAGAGAAGGCACTGGTACCGTC

Ace file of the UniGene sp_v3.0_unigene163867

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chain A, Solution Structure Of The Calcium-Loaded N-Terminal Sensor Domain Of Centrin	-	-	6.0e-25	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Sma3	Centrin	-	-	1.319e-34	-

Source	Gene names
Sma3	At3g50360; CEN1; CEN2; CHLREDRAFT_159554; CML13; CML20; CML8; F11C1.200; GSVIVT00019484001; GSVIVT00034738001; LOC_Os07g42660; LOC_Os10g25010; MICPUCDRAFT_49514; MICPUN_90289; MvCen1; OSJNBa0094J09.23; OSTLU_31762; Odcen; Os07g0618800; Os10g0389000; OsI_2

Source	GOs	Term	Type	Identity
Sma3	centrosome	GO:0005813	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	bacterial-type flagellum	GO:0009288	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-
Sma3	ciliary or flagellar motility	GO:0001539	Biological Process	-
Sma3	mitosis	GO:0007067	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G50360.1	ATCEN2, CEN1, CEN2 centrin2 chr3:18674421-18675502 FORWARD LENGTH=169	1.0e-23	58%
RefSeq	Arabidopsis thaliana	NP_190605.1	putative calcium-binding protein CML20 [Arabidopsis thaliana]	1.0e-23	58%
RefSeq	Populus trichocarpa	XP_002307263.1	predicted protein [Populus trichocarpa]	3.0e-25	65%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PS84

Fln msg: Distance to subject end: 62 aas, your sequence is shorter than subject: 82 - 147

Fln protein: MSLKKQTTSNLATKSTKRGRNELTEEQRQEIKEAFDLFDTDGSGRIDAKELKVAMRALGFEPKKEEVKRMIAEVDREGTGTV

Protein Length: 83

Fln nts: CAGAACTCACCCTCTCTTCAAA_-_ATGTCTCTCAAGAAGCAAACTACCTCTAACCTCGCCACCAAGTCCACCAAGAGAGGAAGAAACGAACTCACTGAAGAACAAAGACAAGAAATCAAGGAAGCCTTCGATCTTTTCGACACTGATGGCTCTGGTAGAATTGATGCTAAGGAATTGAAGGTTGCCATGAGAGCCCTCGGCTTCGAACCCAAGAAGGAAGAAGTTAAGAGAATGATTGCTGAAGTCGACAGAGAAGGCACTGGTACCGTC

Fln Alignment:

HA8LWWM01BMKWK___KRGRNELTEEQRQEIKEAFDLFDTDGSGRIDAKELKVAMRALGFEPKKEEVKRMIAEVDREGTGTV
C0PS84________________KGRKHGLTDQKRQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQIRQMIADVDKDGSGTI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain