SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene163828

Length: 285 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene163828
AGTAATATATTCAATCGAGTCTTTCCTAAATTTGATCTGATGCTTTAAAACTGCATTTAATACGATATGTTTCACATAGCTAGCTGTGTGCATAACAGGAACTGATTCCTGTGATCGCTGGGAGTGCGACGAATATGCTAAAGAAATGGAAAATTTCGATTGAGGCAGGCGTGAATGAGATAGAGGTTTGTGAACAGTTTGAGAATCTTAGTGCAGATATCATTGCACGAACAGCTTTTGGCACCAGCTACGAATGAGGAAAACGCATATTTCATATGCAGTCTG

Ace file of the UniGene sp_v3.0_unigene163828 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cytochrome P450 enzyme [Pisum sativum]	-	-	2.0e-08	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G26710.1	BAS1, CYP734A1, CYP72B1 Cytochrome P450 superfamily protein chr2:11380700-11383413 FORWARD LENGTH=520	4.0e-11	45%
RefSeq	Arabidopsis thaliana	NP_180239.1	PHYB activation tagged suppressor 1 protein [Arabidopsis thaliana]	5.0e-11	45%
RefSeq	Populus trichocarpa	XP_002332385.1	cytochrome P450 [Populus trichocarpa]	7.0e-13	49%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWW9

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 290 aas, your sequence is shorter than subject: 85 - 517

Fln protein: *YIQSSLS*I*SDALKLHLIRYVSHS*LCA*QELIPVIAGSATNMLKKWKISIEAGVNEIEVCEQFENLSADIIARTAFGTSYE*

Protein Length: 86

Fln nts: AGTAATATATTCAATCGAGTCTTTCCTAAATTTGATCTGATGCTTTAAAACTGCATTTAATACGATATGTTTCACATAGCTAGCTGTGTGCATAACAGGAACTGATTCCTGTGATCGCTGGGAGTGCGACGAATATGCTAAAGAAATGGAAAATTTCGATTGAGGCAGGCGTGAATGAGATAGAGGTTTGTGAACAGTTTGAGAATCTTAGTGCAGATATCATTGCACGAACAGCTTTTGGCACCAGCTACGAATGAGGAAAACGCATATTTCATATGCAGTCTG

Fln Alignment:

HA8LWWM01B5GVL___LIPVIAGSATNMLKKWKISIEAGVNEIEVCEQFENLSADIIARTAFGTSYE*GKRIFHMQ
A9NWW9________________MVPTIVESTANMLEKWGKLVLSGAEEVEVLKEFCNLTADVISRTALGSSYAEAKHIFNLQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain