SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene163827

Length: 208 nt

UniGene Fasta

>sp_v3.0_unigene163827
ACGCAGTGTTAGATGATGATTGGTGGGAGAGGGTGGATCTTACCATAAAGATCATGAAACCTATCATTTCTTTCTTGCGGTTTGTAGACACGGACCAGCCCATCTTAGGAGAGGTTTATGAGGGTTGGGATTCCATGATTGAGTCTGTGAAGACTATTGTTATGGAGAATGAGTGCCCTGCATATAAGACATCAGCAGAGAGCTTATG

Ace file of the UniGene sp_v3.0_unigene163827

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os02g0513700 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q0E0X9_ORYSJ	-	-	3.0e-08	50%
FL-Next	tr=Putative uncharacterized protein Sb08g016890; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	0.0	50%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: C5YPA4

Fln msg: Distance to subject end: 75 aas, your sequence is shorter than subject: 68 - 212

Fln protein: AVLDDDWWERVDLTIKIMKPIISFLRFVDTDQPILGEVYEGWDSMIESVKTIVMENECPAYKTSAESL

Protein Length: 69

Fln nts: ACGCAGTGTTAGATGATGATTGGTGGGAGAGGGTGGATCTTACCATAAAGATCATGAAACCTATCATTTCTTTCTTGCGGTTTGTAGACACGGACCAGCCCATCTTAGGAGAGGTTTATGAGGGTTGGGATTCCATGATTGAGTCTGTGAAGACTATTGTTATGGAGAATGAGTGCCCTGCATATAAGACATCAGCAGAGAGCTTATG

Fln Alignment:

HA8LWWM01C6YBB___VLDDDWWERVDLTIKIMKPIISFLRFVDTDQPILGEVYEGWDSMIESVKTIVMENE
C5YPA4________________ILNDVWWDKVDYILKITSPIYEMIRMTDTDTPCLHLVYEMWDSMIEKVKEVIYRYE

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain