SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene163779

Length: 229 nt

UniGene Fasta

>sp_v3.0_unigene163779
ATATCAAGACGGCCAACATTCTTCTAGACAGGAATTTCAATGGAAAGCTCGCGGATTTCGGCCTTTCAAGAATGACAATTGATGGGGAGGCTTCTTATGTTATTACTTCAGTGAAAGGAACCTTAGGATACCTGGATCCAGCGTATTTGACACATACAACTTTTGCAATATTCCGAGTAATTGCTAATTTAGCAGACGTAATTCATTTTTGTTTGAGCTTCTTAACTTA

Ace file of the UniGene sp_v3.0_unigene163779

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Leucine-rich repeat family protein / protein kinase family protein n=1 Tax=Glycine max RepID=C6ZRY3_SOYBN	-	-	5.0e-10	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%

Source	Gene names
Sma3	T14L22.12;

Source	GOs	Term	Type	Identity
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G39360.1	Protein kinase superfamily protein chr2:16437592-16440039 REVERSE LENGTH=815	1.0e-12	60%
RefSeq	Arabidopsis thaliana	NP_181468.1	putative receptor-like protein kinase [Arabidopsis thaliana]	1.0e-12	60%
RefSeq	Populus trichocarpa	XP_002322852.1	predicted protein [Populus trichocarpa]	3.0e-13	49%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABB7

Fln msg: STOP codon was not found. Distance to subject end: 24 aas, your sequence is shorter than subject: 75 - 106

Fln protein: IKTANILLDRNFNGKLADFGLSRMTIDGEASYVITSVKGTLGYLDPAYLTHTTFAIFRVIANLADVIHFCLSFLT

Protein Length: 76

Fln nts: ATATCAAGACGGCCAACATTCTTCTAGACAGGAATTTCAATGGAAAGCTCGCGGATTTCGGCCTTTCAAGAATGACAATTGATGGGGAGGCTTCTTATGTTATTACTTCAGTGAAAGGAACCTTAGGATACCTGGATCCAGCGTATTTGACACATACAACTTTTGCAATATTCCGAGTAATTGCTAATTTAGCAGACGTAATTCATTTTTGTTTGAGCTTCTTAACTTA

Fln Alignment:

HA8LWWM01BCU39___KLADFGLSRMTIDGEASYVITSVKGTLGYLDPAYLTH
D5ABB7________________KLDDFGLSRMTIDGEATHVTTVVKGTAGYLDPEYRKH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain