SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene163774

Length: 385 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene163774
GACGAGAGCCAACTGCAAGTGATGAAGAGAGGATGTTAGGTACAGATCGTTCTGCAAAACTTAGCGAAAAAGTCAATCAGTTTATCTTGCGCCGAACAAATGCATTGTTATCCAATCATCTACCTCCAAAGATTGTGGAGGTGGTTTGCTGCAGGTTAACGGATCTTCAAGCTAATCTCTATCGACATTTTATTGAGTCTAAGAATGTGAAACAGGTACTTCAGGATCAAACCAAACGCTGCAAAGTTCTGGCCTCTATTACAGCCCTGAAAAAACTTTGTAACCATCCAAAAGTAAGTCTGTTTCTATGCTTATTACCGTGATATAGAGCTTCTAGTAGCTGATTTGAAGAGAAAGCAAGGAGCACTCCATTGAAAAGTTTGAT

Ace file of the UniGene sp_v3.0_unigene163774 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA repair protein RAD54-like [Arabidopsis thaliana]	-	-	1.0e-35	73%
FL-Next	sp=DNA repair and recombination protein RAD54; Oryza sativa subsp. japonica (Rice).	-	-	0.0	75%
Sma3	SNF2 super family	-	-	3.446e-06	-

Source	Gene names
Sma3	AtRAD54; CHLREDRAFT_111277; CHR1505; CHR3511; GSVIVT00036577001; MICPUCDRAFT_11467; MICPUCDRAFT_58384; MICPUN_60933; OSTLU_16586; Os02g0762800; OsI_09041; OsJ_08484; OsRad54; Ot08g03870; P0486G03.23; PHYPADRAFT_228729; RAD54; RCOM_0813670; VITISV_021223;

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	double-strand break repair via homologous recombination	GO:0000724	Biological Process	-
Sma3	response to gamma radiation	GO:0010332	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SNF2-related	IPR000330	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G19210.1	ATRAD54, CHR25, RAD54 homolog of RAD54 chr3:6652799-6658876 REVERSE LENGTH=910	7.00649e-43	73%
RefSeq	Arabidopsis thaliana	NP_188552.3	Rad54-like protein [Arabidopsis thaliana]	8.99634e-43	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: A4PBL4

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 407 aas, your sequence is shorter than subject: 107 - 980

Fln protein: REPTASDEERMLGTDRSAKLSEKVNQFILRRTNALLSNHLPPKIVEVVCCRLTDLQANLYRHFIESKNVKQVLQDQTKRCKVLASITALKKLCNHPKVSLFLCLLP*

Protein Length: 108

Fln nts: GACGAGAGCCAACTGCAAGTGATGAAGAGAGGATGTTAGGTACAGATCGTTCTGCAAAACTTAGCGAAAAAGTCAATCAGTTTATCTTGCGCCGAACAAATGCATTGTTATCCAATCATCTACCTCCAAAGATTGTGGAGGTGGTTTGCTGCAGGTTAACGGATCTTCAAGCTAATCTCTATCGACATTTTATTGAGTCTAAGAATGTGAAACAGGTACTTCAGGATCAAACCAAACGCTGCAAAGTTCTGGCCTCTATTACAGCCCTGAAAAAACTTTGTAACCATCCAAAAGTAAGTCTGTTTCTATGCTTATTACCGTGATATAGAGCTTCTAGTAGCTGATTTGAAGAGAAAGCAAGGAGCACTCCATTGAAAAGTTTGAT

Fln Alignment:

HA8LWWM01BT4M2___REPTASDEERMLGTDRSAKLSEKVNQFILRRTNALLSNHLPPKIVEVVCCRLTDLQANLYRHFIESKNVKQVLQDQTKRCKVLASITALKKLCNHPKV
A4PBL4________________REPTASAEEKNLGSERSAELSAKVNLFILRRTNALLSNHLPPKIVEVVCCKLTALQTALYNHFIHSKNVKRLISEGTKQSKVLAYITALKKLCNHPKL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain