SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene163666

Length: 366 nt

UniGene Fasta

>sp_v3.0_unigene163666
ATTTCACAACTAGGGATGTACAAATGGGTTTTGATATCTCTTTAACTAAGCATAAGGGACAGTATGCTCTTCGAAACTATATCATGAAAGTCCACGTTTGATCTGTGTGCTTTATACGTCTCCAACATGTGGACCTTGTAGAACTCTTAAGCCCATTCTGACCAAGGTGATTGAGGAATTTGAGAAGAGTATACACTTCGTTGAGATTGATATAGAAGAGGATCCTGAAATTGCTGAGGCAGCAGGGATAATGGGAACACCGTATGTCCAATTCTTCAAGAACAAAGAAAAGCTGAAGGACTTCCCTGGAGTTAAGATGAAGAGAGAATACCGAGAATTCATCAGGGCAAATACATGACAGTGAAC

Ace file of the UniGene sp_v3.0_unigene163666

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Thioredoxin reductase n=1 Tax=Picea sitchensis RepID=B8LRB6_PICSI	-	-	1.4013e-45	75%
FL-Next	sp=Thioredoxin reductase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Sma3	Thioredoxin reductase	-	-	7.197e-39	-

Source	ECs	Term	Type	e value	Identity
Sma3	Thioredoxin-disulfide reductase.	EC:1.8.1.9	-	1.04817e-42	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Pyrimidine metabolism	00240		1.04817e-42	%
Sma3	Selenocompound metabolism	00450		1.04817e-42	%

Source	Gene names
Sma3	At2g41680; At2g41680/T32G6.20; CHLREDRAFT_78928; CvNTR-C; GSVIVT00025615001; MICPUCDRAFT_23559; NTRC; NTRC1; OSTLU_28227; Os07g0657900; OsI_27178; OsJ_25429; OsNtrC; Ot18g00250; PHYPADRAFT_173396; POPTRDRAFT_1080427; RCOM_1216280;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	thioredoxin-disulfide reductase activity	GO:0004791	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-
Sma3	removal of superoxide radicals	GO:0019430	Biological Process	-
Sma3	hydrogen peroxide catabolic process	GO:0042744	Biological Process	-
Sma3	cell redox homeostasis	GO:0045454	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Pyridine nucleotide-disulphide oxidoreductase, class-II	IPR000103	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain	IPR001327	-	-
Sma3	Thioredoxin reductase	IPR005982	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, class-II, active site	IPR008255	-	-
Sma3		IPR012335	-	-
Sma3	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	IPR013027	-	-
Sma3	Thioredoxin domain	IPR013766	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3		IPR017936	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G41680.1	NTRC NADPH-dependent thioredoxin reductase C chr2:17376349-17379028 REVERSE LENGTH=529	8.0e-38	75%
RefSeq	Arabidopsis thaliana	NP_565954.1	NADPH-dependent thioredoxin reductase 3 [Arabidopsis thaliana]	1.0e-37	75%
RefSeq	Populus trichocarpa	XP_002308935.1	predicted protein [Populus trichocarpa]	4.0e-38	81%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRB6

Fln msg: Overlapping hits, possible frame ERROR between 74 and 56, your sequence is shorter than subject: 119 - 537

Fln protein: FTTRDVQMGFDISLTKHxxxxxxxxLYHESPRLICVLYTSPTCGPCRTLKPILTKVIEEFEKSIHFVEIDIEEDPEIAEAAGIMGTPYVQFFKNKEKLKDFPGVKMKREYREFIRANT*

Protein Length: 120

Fln nts: ATTTCACAACTAGGGATGTACAAATGGGTTTTGATATCTCTTTAACTAAGCATxxxxxxxxxxxxxxxxxxxxxxxxCTATATCATGAAAGTCCACGTTTGATCTGTGTGCTTTATACGTCTCCAACATGTGGACCTTGTAGAACTCTTAAGCCCATTCTGACCAAGGTGATTGAGGAATTTGAGAAGAGTATACACTTCGTTGAGATTGATATAGAAGAGGATCCTGAAATTGCTGAGGCAGCAGGGATAATGGGAACACCGTATGTCCAATTCTTCAAGAACAAAGAAAAGCTGAAGGACTTCCCTGGAGTTAAGATGAAGAGAGAATACCGAGAATTCATCAGGGCAAATACATGACAGTGAAC

Fln Alignment:

HA8LWWM01CUK8Q___FTTRDVQMGFDISLTKHKxxxxxxKLYHESPRLICVLYTSPTCGPCRTLKPILTKVIEEFEKSIHFVXXXXXXXXXXXXXXGIMGTPYVQFFKNKEKLKDFPGVKMKREYREFIRANT
B8LRB6________________FTTRDVQMGFDISLTKHKxxxxxxKLYHESPRLICVLYTSPTCGPCRTLKPILNKVLDEFEKSIHFVEIDIEEDPEIAEAAGIMGTPYVQFFKNKEKLKDIPGVKTKSEYREFIRANT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain