SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene163609

Length: 403 nt

UniGene Fasta

>sp_v3.0_unigene163609
AATTGAACTGTACTATGGTATTCTGATGCGATATGTAAAAGCTTCAAGCGCTTATCTGGGAAATCAAGAAGATTCGGTAGACCTCGATATTACGTACTATCGAGCCCATGATCCCAACACTCCTCGACTGTACGAAGACGTGCTGGAGGAAATCGAGCAAATGGCTCTAGTGAAGTATGGAGCTCTGCCACACTGGGGAAAGAACCGAAACATTGCGTTTGACGCAGTGATGAAAAAATATAAAAAATACGAGGCGTTTCTAGCAGTTAAAAACAAATACGATCCTCAGGGACTTTTCTCCAGTGAGTGGACTGATGGTGTTCTGGGAGTAGGAAATGAGGGAGTGATTATAAAGAAAGATGGATGCGCTCTGGAAGGCCTGTGCGTGTGCTCAGAGGATGCG

Ace file of the UniGene sp_v3.0_unigene163609

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	D-arabinono-1,4-lactone oxidase-like protein n=3 Tax=Arabidopsis RepID=O81030_ARATH	-	-	0.0	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Sma3	Genomic DNA, chromosome 5, P1 clone: MCD7	-	-	2.801e-07	-

Source	ECs	Term	Type	e value	Identity
Sma3	L-gulonolactone oxidase.	EC:1.1.3.8	-	8.406e-08	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Ascorbate and aldarate metabolism	00053		8.406e-08	%
Sma3	Metabolic pathways	01100		8.406e-08	%

Source	Gene names
Sma3	At1g32300; At2g46740; At2g46750; At2g46760; At5g56470; At5g56490; F15N18_130; F27G20_8; F5D14.6; GSVIVT00026155001; GSVIVT00032453001; LOC_Os03g36530; OSIGBa0111E13.1; OSIGBa0113I06.5; OSJNBa0034E24.20; OSJNBa0034E24.8; Os01g0687800; Os02g0124400; Os02g01

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	D-arabinono-1,4-lactone oxidase activity	GO:0003885	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	FAD linked oxidase, N-terminal	IPR006094	-	-
Sma3	D-arabinono-1,4-lactone oxidase	IPR007173	-	-
Sma3	Plant-specific FAD-dependent oxidoreductase	IPR010030	-	-
Sma3	Protein-tyrosine phosphatase, active site	IPR016130	-	-
Sma3	FAD-binding, type 2	IPR016166	-	-
Sma3	FAD-linked oxidase, FAD-binding, subdomain 2	IPR016168	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G46740.1	D-arabinono-1,4-lactone oxidase family protein chr2:19205182-19207455 REVERSE LENGTH=590	70%
RefSeq	Arabidopsis thaliana	NP_182197.1	D-arabinono-1,4-lactone oxidase-like protein [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002302668.1	predicted protein [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAQ1

Fln msg: Distance to subject end: 79 aas, your sequence is shorter than subject: 134 - 363

Fln protein: IELYYGILMRYVKASSAYLGNQEDSVDLDITYYRAHDPNTPRLYEDVLEEIEQMALVKYGALPHWGKNRNIAFDAVMKKYKKYEAFLAVKNKYDPQGLFSSEWTDGVLGVGNEGVIIKKDGCALEGLCVCSEDA

Protein Length: 135

Fln nts: AATTGAACTGTACTATGGTATTCTGATGCGATATGTAAAAGCTTCAAGCGCTTATCTGGGAAATCAAGAAGATTCGGTAGACCTCGATATTACGTACTATCGAGCCCATGATCCCAACACTCCTCGACTGTACGAAGACGTGCTGGAGGAAATCGAGCAAATGGCTCTAGTGAAGTATGGAGCTCTGCCACACTGGGGAAAGAACCGAAACATTGCGTTTGACGCAGTGATGAAAAAATATAAAAAATACGAGGCGTTTCTAGCAGTTAAAAACAAATACGATCCTCAGGGACTTTTCTCCAGTGAGTGGACTGATGGTGTTCTGGGAGTAGGAAATGAGGGAGTGATTATAAAGAAAGATGGATGCGCTCTGGAAGGCCTGTGCGTGTGCTCAGAGGATGCG

Fln Alignment:

HA8LWWM01B6ADZ___IELYYGILMRYVKASSAYLGNQEDSVDLDITYYRAHDPNTPRLYEDVLEEIEQMALVKYGALPHWGKNRNIAFDAVMKKYKKYEAFLAVKNKYDPQGLFSSEWTDGVLGVGNEGVIIKKDGCALEGLCVCSED
D5AAQ1________________VELYNGFLMRYVKASSAYLGKQEDSVEIEITYYRSKDPSTPRLYEDVLEEIEQMALMKYGALPHWGKNRNLAFDGVLKKYNKYEAFLQVKSKYDPQGLFSNEWTDGVLEIGQVGVIIKKDGCALEGLCVCSED

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain