SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene163604

Length: 175 nt

UniGene Fasta

>sp_v3.0_unigene163604
AAGAACTGGAAGAGAGGTTTTGGCATGAGTTCAATGACTACAGATTGCAGCTAGCTACTCACCAGGAAGAAAGAGATGCTATTTTAGCAAAGATTGAAGTAACACAAATACAGATCGAACAATTGAAGCAGACGAATGTACTCAATGATGCCTTTCATATTTTTCATGATGGGGA

Ace file of the UniGene sp_v3.0_unigene163604

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Beclin 1-like n=1 Tax=Oryza sativa Japonica Group RepID=Q5QLF9_ORYSJ	-	-	8.0e-19	75%
FL-Next	sp=Beclin-1-like protein; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	64%
Sma3	Beclin 1 protein	-	-	6.255e-37	-

Source	Gene names
Sma3	At3g61710; F15G16.100; GSVIVT00027024001; LOC_Os03g15290; LOC_Os03g44200; OSJNBa0038E17.21; Os01g0681400; Os03g0258500; Os03g0644000; OsI_03281; OsI_10816; OsI_12789; OsJ_03022; OsJ_10201; OsJ_11877; P0019E03.22; PHYPADRAFT_124820; PHYPADRAFT_223370; POPT

Source	GOs	Term	Type	e value	Identity
Sma3	autophagy	GO:0006914	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Autophagy-related protein 6	IPR007243	-	0.0	-
Sma3	TonB box, conserved site	IPR010916	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G61710.1	ATATG6, ATG6, BECLIN1, AtBECLIN1 AUTOPHAGY 6 chr3:22839477-22842253 REVERSE LENGTH=517	1.0e-18	64%
RefSeq	Arabidopsis thaliana	NP_001030914.1	Beclin-1-like protein [Arabidopsis thaliana]	4.0e-19	64%
RefSeq	Populus trichocarpa	XP_002302626.1	predicted protein [Populus trichocarpa]	9.0e-22	70%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9M367

Fln msg: Distance to subject end: 199 aas, your sequence is shorter than subject: 57 - 517

Fln protein: ELEERFWHEFNDYRLQLATHQEERDAILAKIEVTQIQIEQLKQTNVLNDAFHIFHDG

Protein Length: 58

Fln nts: AAGAACTGGAAGAGAGGTTTTGGCATGAGTTCAATGACTACAGATTGCAGCTAGCTACTCACCAGGAAGAAAGAGATGCTATTTTAGCAAAGATTGAAGTAACACAAATACAGATCGAACAATTGAAGCAGACGAATGTACTCAATGATGCCTTTCATATTTTTCATGATGGGGA

Fln Alignment:

HA8LWWM01DY2C3___ELEERFWHEFNDYRLQLATHQEERDAILAKIEVTQIQIEQLKQTNVLNDAFHIFHDG
Q9M367________________ELEDRYWQEFNNFQFQLIAHQEERDAILAKIEVSQAHLELLNKTNVLIDAFPIRNDG

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain