SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene163568

Length: 417 nt

UniGene Fasta

>sp_v3.0_unigene163568
AAGCTCAACTGCAATTCTTTCGTTGTATTGCGTTGTTTTGTAGTTGTGTTTAATTACTTGGTGGTGGACGTTGCAATGGGGGCAAGAACCAGTTTCGATTTATGTTACAGCAATACTAGCGTTAATATTTAACGTTTGTCTTCAAGGAGCTACGGGTGCGACGTTTGTGATCCAGAACCAGTGTTCATACACGGTATGGGCCGCAGGTATTCCCGTAGGTGGCGGTCAAGCGCTGGGGCAAGGGCAATCATGGAGTGTTGACGTGCCCGCAGGAACAAGCTCAGGCAGATTTTGGGGACGTACGGGATGCTCCTTCGATGCCTCTGGTAAAGGAAGCTGCAGCACTGGTGACTGCGGTGGAGTGCTCAGTTGTACGCTCTCGGACAGTCTCCTACAACACTGGTTGAATATACTCTG

Ace file of the UniGene sp_v3.0_unigene163568

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Thaumatin-like protein S1 n=2 Tax=Pinus monticola RepID=D3IZ11_PINMO	-	-	84%
FL-Next	tr=Thaumatin-like protein S1; Pinus monticola (Western white pine) (Strobus monticola).	-	-	84%
Sma3	Thaumatin-like protein	-	-	-

Source	Gene names
Sma3	5A1A.16; AP24; At4g11650; Cry j 3.1; Cry j 3.2; Cry j 3.3; Cry j 3.4; Cry j 3.6; Cry j 3.7; Cry j 3.8; GSVIVT00001102001; GSVIVT00001105001; GSVIVT00001108001; GSVIVT00001109001; GSVIVT00001110001; GSVIVT00001112001; GSVIVT00001114001; LOC_Os03g45960; LOC

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	serine-type endopeptidase inhibitor activity	GO:0004867	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	xenobiotic metabolic process	GO:0006805	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	defense response to fungus	GO:0050832	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	Thaumatin, pathogenesis-related	IPR001938	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Thaumatin, conserved site	IPR017949	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G11650.1	ATOSM34, OSM34 osmotin 34 chr4:7025127-7026113 REVERSE LENGTH=244	3.0e-30	57%
RefSeq	Arabidopsis thaliana	NP_192902.1	osmotin-like protein OSM34 [Arabidopsis thaliana]	4.0e-30	57%
RefSeq	Populus trichocarpa	XP_002299547.1	predicted protein, partial [Populus trichocarpa]	9.0e-29	57%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D3IZ11

Fln msg: Distance to subject end: 64 aas, W1: There is no M at the beginning, your sequence is shorter than subject: 124 - 181

Fln protein: LCLITWWWTLQWGQEPVSIYVTAILALIFNVCLQGATGATFVIQNQCSYTVWAAGIPVGGGQALGQGQSWSVDVPAGTSSGRFWGRTGCSFDASGKGSCSTGDCGGVLSCTLSDSLLQHWLNIL

Protein Length: 125

Fln nts: AAGCTCAACTGCAATTCTTTCGTTGTATTGCGTTGTTTTGTAGTTGTGTTTAATTACTTGGTGGTGGACGTTGCAATGGGGGCAAGAACCAGTTTCGATTTATGTTACAGCAATACTAGCGTTAATATTTAACGTTTGTCTTCAAGGAGCTACGGGTGCGACGTTTGTGATCCAGAACCAGTGTTCATACACGGTATGGGCCGCAGGTATTCCCGTAGGTGGCGGTCAAGCGCTGGGGCAAGGGCAATCATGGAGTGTTGACGTGCCCGCAGGAACAAGCTCAGGCAGATTTTGGGGACGTACGGGATGCTCCTTCGATGCCTCTGGTAAAGGAAGCTGCAGCACTGGTGACTGCGGTGGAGTGCTCAGTTGTACGCTCTCGGACAGTCTCCTACAACACTGGTTGAATATACTCTG

Fln Alignment:

HA8LWWM01CP11Y___PVSIYVTAILALIFNVC-LQGATGATFVIQNQCSYTVWAAGIPVGGGQALGQGQSWSVDVPAGTSSGRFWGRTGCSFDASGKGSCSTGDCGGVLSCTLS----DSLLQHWLN
D3IZ11________________PTTIYVTAIVALIFNVFYLQGAMGATFAIQNQCSYTVWAAGIPVGGGQALGQGQSWSVDVPAGTSSGRFWGRTGCSFDASGKGSCSTGDCGGVLSCTLSGQSPTTLVEYTLN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain