SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene163523

Length: 244 nt

UniGene Fasta

>sp_v3.0_unigene163523
AGGTCGGGTCCAACTGAGGAAGATCGGAAAACAAAATCAACCGTCAAGTAACTTTTTCAAAGCGGCGAAACGGACTGATAAAAAAGGCGTCGGAACTGTCAATCCTTTGCGACGCGGAAGTGGCCTTGATCGTCTTCTCCAACAGAGGCAAACTATACGAGTTCTCCAGTTCCAGTATGGGGAAGATATTGCAAAGATACCGGAAATGTTCAAATTCAGGATGGGATCCGGCTCGATTTACACA

Ace file of the UniGene sp_v3.0_unigene163523

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative MADS domain transcription factor GGM9 [Gnetum gnemon]	-	-	3.0e-23	81%
FL-Next	tr=Dal1 protein; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	82%
Sma3	MADS box protein	-	-	4.909e-28	-

Source	Gene names
Sma3	AG6; AGL16; AGL2; AGL2-1; AGL2-2; AGL2-3; AGL2-4; AGL28; AGL30; AGL37; AGL6; AGL6-1; AGL6a; AGL6b; AGL9; AOM1; AOM3; AOM4; ApMADS3; At1g24260; At2g03710; At2g45650; At3g02310; At5g15800; CAGL2; CMB1; CiSEP1; CitMADS3; DEFH200; DEFH49; DEFH72; EGM1; EGM3;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	tissue development	GO:0009888	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	cell differentiation	GO:0030154	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Transcription factor, MADS-box	IPR002100	-	0.0	-
Sma3	Transcription factor, K-box	IPR002487	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G24260.2	SEP3, AGL9 K-box region and MADS-box transcription factor family protein chr1:8593790-8595862 REVERSE LENGTH=251	1.0e-28	74%
RefSeq	Arabidopsis thaliana	NP_001185081.1	developmental protein SEPALLATA 3 [Arabidopsis thaliana]	1.0e-28	74%
RefSeq	Populus trichocarpa	XP_002299317.1	predicted protein [Populus trichocarpa]	5.0e-29	76%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q40765

Fln msg: Distance to subject end: 177 aas, atg_distance in limit (1-15): atg_distance = 4, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 75 - 261

Fln protein: GRSENKINRQVTFSKRRNGLIKKASELSILCDAEVALIVFSNRGKLYEFSSSSMGKILQRYRKCSNSGWDPARFT

Protein Length: 76

Fln nts: AGGTCGGGTCCAACTGAGGAAGATCGGAAAACAAAATCAACCGTCAAGTAACTTTTTCAAAGCGGCGAAACGGACTGATAAAAAAGGCGTCGGAACTGTCAATCCTTTGCGACGCGGAAGTGGCCTTGATCGTCTTCTCCAACAGAGGCAAACTATACGAGTTCTCCAGTTCCAGTATGGGGAAGATATTGCAAAGATACCGGAAATGTTCAAATTCAGGATGGGATCCGGCTCGATTTACACA

Fln Alignment:

HA8LWWM01A9YOM___RSENKINRQVTFSKRRNGLIKKASELSILCDAEVALIVFSNRGKLYEFSSSSMGKILQRYRKCS
Q40765________________RIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFASSSMNKTLERYEKCS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain