SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene163504

Length: 200 nt

UniGene Fasta

>sp_v3.0_unigene163504
ACTATGTGAAGGAAAGGCCATGACTCCCTGTTTGTGGTTGTGAACTGGTTCAACAAGATGTGTGTACTTATCCCTTGTAAGAAGACCATCTCAAGTCATAAAGCAGCAAGGTTGTTCTTTGCCAATGTATGGATGCCAATACACCACATATTGTATGAGGTTTCATATGTGATTTTCATCACATTTGAAGGTAGCTTGCT

Ace file of the UniGene sp_v3.0_unigene163504

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Integrase core domain containing protein n=1 Tax=Asparagus officinalis RepID=Q2AA43_ASPOF	-	-	6.0e-06	56%
FL-Next	tr=Integrase core domain containing protein; Asparagus officinalis (Garden asparagus).	-	-	0.0	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q2AA43

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 296 aas, your sequence is shorter than subject: 66 - 870

Fln protein: TM*RKGHDSLFVVVNWFNKMCVLIPCKKTISSHKAARLFFANVWMPIHHILYEVSYVIFITFEGSL

Protein Length: 67

Fln nts: ACTATGTGAAGGAAAGGCCATGACTCCCTGTTTGTGGTTGTGAACTGGTTCAACAAGATGTGTGTACTTATCCCTTGTAAGAAGACCATCTCAAGTCATAAAGCAGCAAGGTTGTTCTTTGCCAATGTATGGATGCCAATACACCACATATTGTATGAGGTTTCATATGTGATTTTCATCACATTTGAAGGTAGCTTGCT

Fln Alignment:

HA8LWWM01C7GWF___GHDSLFVVVNWFNKMCVLIPCKKTISSHKAARLFFANVW
Q2AA43________________GHDYLYIVVDRFSKVVILIPCKKTVTGVGAAQLFFEHVW

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain