SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene163481

Length: 376 nt

UniGene Fasta

>sp_v3.0_unigene163481
ATAAGGGCACCCCATCAGAAGACTAGAATATGGTTGGGCTCATATTCCACTGCAGAGGCTGCTGCCAGGGCCTATGATGCGGCTCTCCTCTGTCTCAAGGGCTCCTCTGCTGCCCTCAACTTCCCAGAATCTGCCACCATTATTCATCCTCCTCAGAACTGCCAGCTTCCATTGATGTCTCCGAGGTCTATACAGAAAGTTGCAGCTGCTGCTGCTTATGGTTCTGCTAGTCCTGCTGTTGACATTGCAGGCTCTAATGGCGTTGACTGTGCTGCTCACAGTCTTCAAGTTTCTCTGGATTCCATTGTGGAAACAGAGTCTGGTGCTGAAACAATGCCCAATACTCCTGCCAATGAGGGTGTAACGCAGGAGATTT

Ace file of the UniGene sp_v3.0_unigene163481

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative AP2 domain-containing transcription factor (Fragment) n=1 Tax=Musa acuminata RepID=B5RHW0_MUSAC	-	-	4.0e-11	56%
FL-Next	tr=Transcription factor AP2; Taxus cuspidata (Japanese yew).	-	-	0.0	76%
Sma3	Dehydration responsive element binding protein	-	-	2.764e-09	-

Source	Gene names
Sma3	At1g21910; At1g44830; At1g77640; C-EF5; DREB39; DREB40; DREB41; ERF012; ERF013; ERF014; GSVIVT00014863001; GSVIVT00015361001; LOC_Os03g15660; OJ1004_A11.32; OJ1041F02.11; OJ1767_D02.3; Os03g0263000; OsI_09077; OsI_10844; OsI_22116; OsJ_08515; OsJ_10227; O

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	YbaK/aminoacyl-tRNA synthetase-associated domain	IPR007214	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G21910.1	DREB26 Integrase-type DNA-binding superfamily protein chr1:7696655-7697347 FORWARD LENGTH=230	3.0e-14	68%
RefSeq	Arabidopsis thaliana	NP_173609.1	ethylene-responsive transcription factor ERF012 [Arabidopsis thaliana]	4.0e-14	68%
RefSeq	Populus trichocarpa	XP_002337051.1	AP2/ERF domain-containing transcription factor [Populus trichocarpa]	5.0e-14	70%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B2CSN5

Fln msg: Distance to subject end: 40 aas, your sequence is shorter than subject: 125 - 268

Fln protein: IRAPHQKTRIWLGSYSTAEAAARAYDAALLCLKGSSAALNFPESATIIHPPQNCQLPLMSPRSIQKVAAAAAYGSASPAVDIAGSNGVDCAAHSLQVSLDSIVETESGAETMPNTPANEGVTQEI

Protein Length: 126

Fln nts: ATAAGGGCACCCCATCAGAAGACTAGAATATGGTTGGGCTCATATTCCACTGCAGAGGCTGCTGCCAGGGCCTATGATGCGGCTCTCCTCTGTCTCAAGGGCTCCTCTGCTGCCCTCAACTTCCCAGAATCTGCCACCATTATTCATCCTCCTCAGAACTGCCAGCTTCCATTGATGTCTCCGAGGTCTATACAGAAAGTTGCAGCTGCTGCTGCTTATGGTTCTGCTAGTCCTGCTGTTGACATTGCAGGCTCTAATGGCGTTGACTGTGCTGCTCACAGTCTTCAAGTTTCTCTGGATTCCATTGTGGAAACAGAGTCTGGTGCTGAAACAATGCCCAATACTCCTGCCAATGAGGGTGTAACGCAGGAGATTT

Fln Alignment:

HA8LWWM01CWB4H___IRAPHQKTRIWLGSYSTXXXXXXXXXXXLLCLKGSSAALNFPESATIIHPPQNCQLPL-MSPRSIQK
B2CSN5________________IRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSAALNFPDSAIALD-----KEPVGMSPRSIQR

SSRs (tot: 1)

Start position	End position	Sequence	Length
205	216	GCT GCT GCT GCT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain