SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene163424

Length: 247 nt

UniGene Fasta

>sp_v3.0_unigene163424
AACCCGTTGTTCAGGGAAGGATTCAGTGTATCTTGACTGGAGTAAAGAGTTTCAATTTAAGGAACGTGATAAATTCAACCTTTTTGTTTATGTGGATGATGGAAGCCTCATTTCAGAGGTTCTTATCGACCATCAGGTAGTCCAAAGCATTATTGGCCACTCTCCTAGGCAGGTGACTGCTTTGCTAATGAGTGGTGACCAACAAAGTGTGCATACCATAAAGGAGACGATGAAGCGATTCCAACTA

Ace file of the UniGene sp_v3.0_unigene163424

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	55%

Source	Gene names
Sma3	GSVIVT00017974001; RCOM_1505140;

Source	InterPros	Term	Type	e value	Identity
Sma3	Domain of unknown function DUF1767	IPR013894	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G63540.2	ATRMI1, BLAP75, RMI1 Domain of unknown function (DUF1767) chr5:25441033-25444373 REVERSE LENGTH=677	1.0e-15	48%
RefSeq	Arabidopsis thaliana	NP_201159.2	uncharacterized protein [Arabidopsis thaliana]	2.0e-15	48%
RefSeq	Populus trichocarpa	XP_002322278.1	predicted protein [Populus trichocarpa]	7.0e-18	51%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9RAB6

Fln msg: Distance to subject end: 61 aas, your sequence is shorter than subject: 82 - 626

Fln protein: TRCSGKDSVYLDWSKEFQFKERDKFNLFVYVDDGSLISEVLIDHQVVQSIIGHSPRQVTALLMSGDQQSVHTIKETMKRFQL

Protein Length: 83

Fln nts: AACCCGTTGTTCAGGGAAGGATTCAGTGTATCTTGACTGGAGTAAAGAGTTTCAATTTAAGGAACGTGATAAATTCAACCTTTTTGTTTATGTGGATGATGGAAGCCTCATTTCAGAGGTTCTTATCGACCATCAGGTAGTCCAAAGCATTATTGGCCACTCTCCTAGGCAGGTGACTGCTTTGCTAATGAGTGGTGACCAACAAAGTGTGCATACCATAAAGGAGACGATGAAGCGATTCCAACTA

Fln Alignment:

HA8LWWM01A6020___GKDSVYLDWSKEFQFKERDKFNLFVYVDDGSLISEVLIDHQVVQSIIGHSPRQVTALLMSGDQQSVHTIKETMKRFQL
B9RAB6________________GKVKCFLTGVKGFQYKQRTTYELRVYVDDGSLISEILVDHNVVQKGIGHSPEEVTAALSSSDAKRVGNMKDTLKQFQI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain