SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene163413

Length: 428 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene163413
ACTTATATTATCTCACATTTACAGATGATTATTCTCACAAGACCTAGATCTACTTCTTGATGAAAAAGCATGAAGTGTTCACCTAGTTCCGATACTTCAAAGCCATGATTGAAAACAAATTCGAGAAGAAAATCAAGATATTGAGGATTGATAATGGGACTGAGTATGAATCCAATGAATTCCAAGATTATTGCAGGGAAGTTGGCATTAAGAGGGAGACTAAAACGCCATACACTCCCTAGCAGAATGGTGTGGTTGAAAGGAAGAATCGCTCAATTGTAGAAGTTGTTCGTGCCATGTTTCATGATCAAGGACTTCTGAAGTTTCTATGGGCTAAAGCTGCAAATTCCACTATGTATGTTCAAAATTGATGCCCTCATCAAGCATTGGACTCCAAGACTCTCGAAGAAATGTTCACTGTTAAGAAA

Ace file of the UniGene sp_v3.0_unigene163413 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gag-Pol [Ipomoea batatas]	-	-	5.0e-30	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Sma3	Retrotransposon protein, putative, Ty1-copia subclass	-	-	3.118e-10	-

Source	Gene names
Sma3	LOC_Os03g27910; LOC_Os03g46450; LOC_Os10g18420; LOC_Os11g17390; LOC_Os11g29320; LOC_Os12g23320; LOC_Os12g31920; LOC_Os12g34770; OSIGBa0105O19.1; OSJNAb0008A05.17; OSJNBa0056E06.5; OSJNBa0093P23.9; OSJNBb0004M10.18; OSJNBb0008A05.26; OSJNBb0036M02.16; Os02

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	potassium ion transmembrane transporter activity	GO:0015079	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	potassium ion transport	GO:0006813	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	CCAAT-binding transcription factor, subunit B	IPR001289	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	K+ potassium transporter	IPR003855	-	-
Sma3	Zinc finger, PMZ-type	IPR006564	-	-
Sma3	Zinc finger, SWIM-type	IPR007527	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: Distance to subject end: 112 aas, your sequence is shorter than subject: 142 - 407

Fln protein: LYYLTFTDDYSHKT*IYFLMKKHEVFT*FRYFKAMIENKFEKKIKILRIDNGTEYESNEFQDYCREVGIKRETKTPYTP*QNGVVERKNRSIVEVVRAMFHDQGLLKFLWAKAANSTMYVQN*CPHQALDSKTLEEMFTVKK

Protein Length: 143

Fln nts: ACTTATATTATCTCACATTTACAGATGATTATTCTCACAAGACCTAGATCTACTTCTTGATGAAAAAGCATGAAGTGTTCACCTAGTTCCGATACTTCAAAGCCATGATTGAAAACAAATTCGAGAAGAAAATCAAGATATTGAGGATTGATAATGGGACTGAGTATGAATCCAATGAATTCCAAGATTATTGCAGGGAAGTTGGCATTAAGAGGGAGACTAAAACGCCATACACTCCCTAGCAGAATGGTGTGGTTGAAAGGAAGAATCGCTCAATTGTAGAAGTTGTTCGTGCCATGTTTCATGATCAAGGACTTCTGAAGTTTCTATGGGCTAAAGCTGCAAATTCCACTATGTATGTTCAAAATTGATGCCCTCATCAAGCATTGGACTCCAAGACTCTCGAAGAAATGTTCACTGTTAAGAAA

Fln Alignment:

HA8LWWM01AJXEB___YYLTFTDDYSHKT*IYFLMKKHEVFT*FRYFKAMIENKFEKKIKILRIDNGTEYESNEFQDYCREVGIKRETKTPYTP*QNGVVERKNRSIVEVVRAMFHDQGLLKFLWAKAANSTMYVQN*CPHQALDSKTLEEMFTVKK
B8LKX7________________YVLTFIDDYSRRIWVYFLKNKDEVFEKFKEFKAFVEKQSGKSIKILRTDNGKEYVNKEFDHYCKYNGIKREHTVPYTPQQNGVAERKNRTLMEMARCMLHARNMDPKFWAEAINTATYIVNRTPTIAVKHKTPEEAWSRRK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain