SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene163320

Length: 413 nt

UniGene Fasta

>sp_v3.0_unigene163320
TGAAATTCATCCTTGGCATATTCATGGTCACAACTTTTGGATTTTGGGTTATGGAGATGGTTTATTTGATGCAGACAAGGACCCTCTCAGCTATAATCTCAGGAATCCTCCACTGAGGAACACAGTCCCTCTGTTTCCTTATGGATGGACTACCATAAGGCTGAAGGCTGACAATCCTGGGGTTTGGGCTTTTCACTGCCACCTTGAAGCCCATCTACACATGGGAATGGGGATTGTTTTCTCACAAGGAATTGAACATGTTGGAAACCTTCCCGATTTACTATGGGGTGTGGATCTACAAGAAAGTTGTTTCCTTGAGGGGCAAGCATCATGATCTTCTGGCATTTCATCCTTCCAATGCATACTTTTGGCGAATAGTTTGTTTTAAACTCGACGACTAATGATAGGAATAA

Ace file of the UniGene sp_v3.0_unigene163320

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ascorbate oxidase-like protein (Fragment) n=6 Tax=Picea RepID=E5FY33_PICAB	-	-	1.99993e-41	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Sma3	L-ascorbate oxidase	-	-	2.245e-27	-

Source	ECs	Term	Type	e value	Identity
Sma3	Laccase.	EC:1.10.3.2	-	8.753e-11	-
Sma3	L-ascorbate oxidase.	EC:1.10.3.3	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Ascorbate and aldarate metabolism	00053		0.0	%
Sma3	Metabolic pathways	01100		0.0	%

Source	Gene names
Sma3	AAO; AO; AT4g39830; At1g18140; At4g39830; At5g09360; At5g21100; At5g60020; B13-1-1; BcAAO; GLac3; GSVIVT00005406001; GSVIVT00005409001; GSVIVT00006367001; GSVIVT00006368001; GSVIVT00006372001; GSVIVT00006373001; GSVIVT00006374001; GSVIVT00006383001; GSVIV

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	L-ascorbate oxidase activity	GO:0008447	Molecular Function	-
Sma3	laccase activity	GO:0008471	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	lignin catabolic process	GO:0046274	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Oxidoreductase, molybdopterin-binding domain	IPR000572	-	-
Sma3	Multicopper oxidase, type 1	IPR001117	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	Bacterial extracellular solute-binding family 1, conserved site	IPR006061	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	Multicopper oxidase, type 2	IPR011706	-	-
Sma3	Multicopper oxidase, type 3	IPR011707	-	-
Sma3	L-ascorbate oxidase, plants	IPR017760	-	-
Sma3	Laccase	IPR017761	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G21105.1	Plant L-ascorbate oxidase chr5:7172727-7177409 FORWARD LENGTH=588	1.4013e-45	63%
RefSeq	Arabidopsis thaliana	NP_001154729.1	L-ascorbate oxidase [Arabidopsis thaliana]	0.0	63%
RefSeq	Populus trichocarpa	XP_002299782.1	predicted protein [Populus trichocarpa]	9.94922e-44	57%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A889

Fln msg: your sequence is shorter than subject: 111 - 573

Fln protein: EIHPWHIHGHNFWILGYGDGLFDADKDPLSYNLRNPPLRNTVPLFPYGWTTIRLKADNPGVWAFHCHLEAHLHMGMGIVFSQGIEHVGNLPDLLWGVDLQESCFLEGQAS*

Protein Length: 112

Fln nts: TGAAATTCATCCTTGGCATATTCATGGTCACAACTTTTGGATTTTGGGTTATGGAGATGGTTTATTTGATGCAGACAAGGACCCTCTCAGCTATAATCTCAGGAATCCTCCACTGAGGAACACAGTCCCTCTGTTTCCTTATGGATGGACTACCATAAGGCTGAAGGCTGACAATCCTGGGGTTTGGGCTTTTCACTGCCACCTTGAAGCCCATCTACACATGGGAATGGGGATTGTTTTCTCACAAGGAATTGAACATGTTGGAAACCTTCCCGATTTACTATGGGGTGTGGATCTACAAGAAAGTTGTTTCCTTGAGGGGCAAGCATCATGA___TCTTCTGGCATTTCATCCTTCCAATGCATACTTTTGGCGAATAGTTTGTTTTAAACTCGACGACTAATGATAGGAATAA

Fln Alignment:

HA8LWWM01AVMPT___EIHPWHIHGHNFWILGYGDGLFDADKDPLSYNLRNPPLRNTVPLFPYGWTTIRLKADNPGVWAFHCHLEAHLHMGMGIVFSQGIEHVGNLPDLLWGVDL
D5A889________________EIHPWHLHGHDFWILGFGEGVFDPLKDPKKYNLVNPPLRNTVPLFPYGWTALRFKADNPGVWAFHCHLEAHFFMGMGVMFAEGIHKVGRLPRSAMGCGL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain